Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3891
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.0  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   1.0  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   1.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   4.2  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   9.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +2

Query: 242 GTPDRPCPGLCVPMPENWRPTGIH-CLKKRRGSPECPYLM 358
           GTP   CP LCV       P   H C       P CPY +
Sbjct: 636 GTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFV 675


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 121 ASRPKLRHILLIQ*AAKTASQHLSGEELEKALKG-KFQGVIWYPGQTVP 264
           A++PK  H  L+    K        +ELEKA++  +  G++W   + VP
Sbjct: 120 AAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVP 168


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 169 KTASQHLSGEELEKALKGKFQGVIWYPGQTVPGALRS 279
           +T ++   GEE+ K     +Q  ++ PGQ +    RS
Sbjct: 158 RTTNEPFDGEEMAKLFCSSYQSQVFSPGQKIVFDFRS 194


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 174 GESTSFGGRIREGTQGQISGGHLVPRTDRARGSAFXCLKTGGP---LGSTA 317
           G+S+ FGG       G I   ++   ++ +R  +   L T GP   +GST+
Sbjct: 599 GDSSYFGGNFTHTGDGSIKLNYIAMYSETSRNWSSLGLGTNGPVTHIGSTS 649


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 304 WDPLLEKTARESGVPLPDVLKHLPRDLAVWVDPSEVSYRIGEKGAVKVLFN 456
           W+ ++EK   +S +     L  L  D+A+  + +E+ Y + EKGA+  L N
Sbjct: 234 WNNIIEKRFSKSFID--SYLTRLV-DIAISKNVTEIMYYLIEKGAIPQLPN 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,729
Number of Sequences: 5004
Number of extensions: 46080
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)