Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3891
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 29 1.8
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 29 2.3
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 28 3.1
05_03_0036 + 7605138-7605445,7605718-7605805,7606355-7606408,760... 28 3.1
03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256... 28 3.1
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 28 4.1
09_02_0415 - 8835344-8835467,8835543-8835946 27 9.5
09_01_0092 - 1311892-1312055,1312490-1312574,1312628-1312936,131... 27 9.5
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 27 9.5
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 27 9.5
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -1
Query: 307 PSGPPVFRHXNAEPRARSVRGTK*PPEICP*VPSLILPPKDVDSPSWQ 164
P PP+ R +A P VR PP P P PK PSW+
Sbjct: 1046 PDSPPIRRRADASP----VRRGDTPPRRRPGSPVTTTTPKAAKKPSWK 1089
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 371 CPGIWLSGLIQVKYHTVSEKKAL*KFCS 454
CPG+WLS + + KY V EKK+ K S
Sbjct: 425 CPGMWLSDVTRSKY-IVREKKSTKKLYS 451
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 149 YLYNKLPRRRVNIFRGKN*RRHSR--ANFRGSFGTPDRPCPGLCVPMPENWRPTGIH 313
YL+N P R K R H+R A+ +GT + CV E+ RP G+H
Sbjct: 586 YLHNMFPFERYMDVLKKYVRNHARPEASIAKGYGTEE--VIEFCVEFIEDLRPIGVH 640
>05_03_0036 +
7605138-7605445,7605718-7605805,7606355-7606408,
7606860-7606910,7607625-7607642
Length = 172
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 283 HXNAEPRARS----VRGTK*PPEICP*VPSLILPPKDVDSPSWQLIV 155
H +AEP RS +R P + P PSL P ++ +W+L++
Sbjct: 45 HCSAEPPPRSHVLPIRARHAGPSLSPPAPSLSNVPPNILRDAWELVI 91
>03_01_0329 +
2558726-2559112,2559214-2559449,2559537-2559663,
2560190-2560326,2560467-2560626,2560828-2561106,
2561750-2561920,2562636-2562717,2563397-2563623,
2563682-2563727,2564199-2564281,2564376-2564492,
2564965-2565036
Length = 707
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 247 PGQTVPGALRSXA*KL-EAHWDPLLEKTARESGVPLPDVLKHLPRDLAVWVDP 402
PG+T P + + HW P+ + VP P L L RDL +W DP
Sbjct: 59 PGETEPSTSSADEKFVWRDHWYPVSLVEDLDPSVPTPFQL--LNRDLVIWKDP 109
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 346 ALRTPSPFFQAVDPSGP--PVFRHXNAEPRARSVRGTK*PPEICP*VPSLILPPKDVDSP 173
A+ P+P + VDP P P R + E ++G + PP + PS++ P V
Sbjct: 169 AIEAPAPLLR-VDPWEPARPDVRKASGEG---GIKGVRPPPVVLKPPPSMVRPAVCVVES 224
Query: 172 SWQLI 158
+W ++
Sbjct: 225 TWDIL 229
>09_02_0415 - 8835344-8835467,8835543-8835946
Length = 175
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -1
Query: 385 PDPWAGVLVHQVGALRTPSPFFQAVD--PSGPPVFRHXNAEPRAR 257
P P + V + + P PFFQA P G V H + E AR
Sbjct: 13 PTPTSAVSIFRANPPSKPLPFFQAAKARPHGGVVGGHGHGEGAAR 57
>09_01_0092 -
1311892-1312055,1312490-1312574,1312628-1312936,
1314155-1314229,1314363-1314438,1315594-1315679,
1315958-1316203,1316399-1316614
Length = 418
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 394 PRQPDPWAGVLVHQVGALRTPSPFFQAVDPSGPPVFRHXNAEPRARSVR 248
P+QP W + V Q+ A TP P A+ PS + R + R R
Sbjct: 276 PQQPVQWQPIDVEQLTAAYTPPP--PALSPSKDSMLRAVVVREKGRHQR 322
>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +2
Query: 191 RGKN*RRHSRANFRGSFGTPDRPCPGLCVPMPENWRPTGIHCLKKRRGSPECPY 352
RG + H R R P P L V ++W T +CL +P PY
Sbjct: 1189 RGTSELEHHRGYHRVRPTVAVLPLPSLLVGYQDDWLKTSANCLSLWEKAPLEPY 1242
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 397 QPRQPDPWAGVLVHQVGALRTPSPFFQ-AVDPSGPPVFR 284
QP + W+G+ Q+G L++PS + A +G PV +
Sbjct: 101 QPMDLEGWSGMQTEQMGVLQSPSMGWNVAPGVAGSPVVK 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,796
Number of Sequences: 37544
Number of extensions: 377782
Number of successful extensions: 957
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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