Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3889
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 29 0.53
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 1.6
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 2.1
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 2.8
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 25 4.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.5
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 6.5
SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces po... 25 6.5
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 8.6
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 8.6
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 28.7 bits (61), Expect = 0.53
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 225 ARRQHARHQAQY*TRIQNASVGPHVCA*QQTANVF-VS*RMVSIGTLQSGLSQKRIFDVG 401
ARRQ R QA++ R + S+G + + Q ++N+F S R + ++K ++D
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTI 232
Query: 402 ISARGRVRFGQHSHNRRGANSNSRFL 479
G R G S + +++SR L
Sbjct: 233 SEDDGLKRGGSVSKLKPTFSNDSRSL 258
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 154 FCNDPHLCKIIENNYNYC---MQIFKAPADNMRDIRH 255
F + PH C + N +Y MQ+ ++P D+M+ I H
Sbjct: 566 FPDAPHNCHSVPQNSSYPRPPMQVNRSPIDSMQTIPH 602
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 310 NKPPMYSFLKEWFLLAHYKVVSLKSESLTW 399
+KP YS+ KE L AHYK + S T+
Sbjct: 208 SKPFKYSYEKEIVLYAHYKKLDYFSTECTY 237
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 17 RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLN 139
R K N ++ + TP +D+ S+ T+NTL ++S NF N
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQN 328
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +1
Query: 40 LRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 198
+ L D + ++ + +Y + ++ K + + +F DP+L + IEN Y
Sbjct: 352 IHLGDRDVPNALMFIDKYRQVPHILAPLVKVLQQL--EFLRDPYLVQYIENEY 402
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 202 NCNCFL*SCTGAGRCKIEILHIQKIYT 122
NC C+L T + +E+ H+ K+++
Sbjct: 77 NCQCYLYHSTNSQLEPLEVFHLHKLHS 103
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = +2
Query: 146 YFNFATTRTCARL*KTITITVCKYSKRPPTTCATSGTILNAHSKRQCWATCVCLATNRQC 325
+ A R R+ ++T+T K R P++ A ++ K QC +C +
Sbjct: 202 FLKIAGLRNSVRV--SVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKA 259
Query: 326 IRFLKN 343
I F +
Sbjct: 260 IVFFSS 265
>SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 412 VVVFDLDSTLITEE 453
+VVFD+DSTLI +E
Sbjct: 78 LVVFDMDSTLIQQE 91
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 7 MASSLQSKWICLRLNDAIIKRHV 75
+ +LQ C+RLNDA+I++ +
Sbjct: 429 LIQALQKLQTCMRLNDALIEQRL 451
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +1
Query: 307 SNKPPMYS--FLKEWFLLAHYK 366
SN P +YS +L+EW + A YK
Sbjct: 875 SNLPNLYSSSYLEEWNVFAQYK 896
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,874
Number of Sequences: 5004
Number of extensions: 47651
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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