Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3889
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    29   2.6  
Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81575-6|CAB04633.1|  344|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70680-5|CAA94574.1|  402|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z66561-8|CAI79121.1|  137|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z54216-2|CAA90945.1|  242|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    27   7.8  
AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical ...    27   7.8  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 218 SKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQC 325
           ++ P TTC  +GT+LN  ++ Q   TC C  L   +QC
Sbjct: 303 TQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQC 337


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 218 SKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQC 325
           ++ P TTC  +GT+LN  ++ Q   TC C  L   +QC
Sbjct: 303 TQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQC 337


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 218 SKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQC 325
           ++ P TTC  +GT+LN  ++ Q   TC C  L   +QC
Sbjct: 303 TQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQC 337


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 271 FKTPV--LGHMCVLSNKPPMYSFLKEWFLLAH 360
           F TP+  L H CVL+  P  +  LK W +  H
Sbjct: 26  FVTPIYPLAHYCVLTKSPKSFGILK-WIIYVH 56


>Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical
           protein W02A11.4 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -1

Query: 474 IWNLNLLLFGYESAVQIEHDHVRKSPRQRFAFERDHFVV 358
           IW L+     + + +Q   + +R  P  + AF++DH ++
Sbjct: 303 IWTLSTCAKVFSTCIQELLEQIRAEPDVKLAFDKDHAII 341


>Z81575-6|CAB04633.1|  344|Caenorhabditis elegans Hypothetical
           protein R08H2.7 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
 Frame = +1

Query: 193 NYNYCMQ--IFKAPADNMRDIRHNIKRAFKTP--VLGHMCVLSNKPPMYSFLKEWFLLAH 360
           NY+ C Q   + + ++ +    H +   F  P  + G  C++   P      K   L+ H
Sbjct: 8   NYSKCQQPTSYFSTSNYVHTGVHTVT-IFAVPLWIYGFYCIIKITPKQLGSGKWDLLIVH 66

Query: 361 YKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQIQIPDSFVYHSLQEL 504
              V L    +  G P++    L    I   + I IP   + +S+Q L
Sbjct: 67  IWTVCLDITFILLGLPYMFFPSLSILFIGSGKLIGIPSWILSYSIQSL 114


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 359 CANRNHSLRNEYIGGLLLSTHMWPN 285
           C NR  S RNEY+  L    HM P+
Sbjct: 161 CCNRTWSSRNEYVAHLHGRDHMCPD 185


>Z70680-5|CAA94574.1|  402|Caenorhabditis elegans Hypothetical
           protein C25G4.8 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 10  ASSLQSKWICLR-LNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKII 186
           A S+QS  ICL  +   I K+  L+  + A   +    ++K FE  + +   + H C+ +
Sbjct: 249 ADSVQSIDICLTYMITGIYKKPALLSPKLAFEIFALAMQWKVFEPKVLKNSIEKHCCEEL 308

Query: 187 ENNYNYCMQI 216
           + NY   M +
Sbjct: 309 QKNYEDIMYV 318


>Z66561-8|CAI79121.1|  137|Caenorhabditis elegans Hypothetical
           protein F08G12.11 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 493 SCGTQRNLEFEFAPLRL*ECCPNRTRPRAEIP 398
           +C  +R++ FE+       CC N+TRP+  +P
Sbjct: 51  ACVQRRSVNFEYDC----HCCKNQTRPKRTVP 78


>Z54216-2|CAA90945.1|  242|Caenorhabditis elegans Hypothetical
           protein T24H10.3 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 305 LATNRQCI-RFLKNGFYWHTTKWSLSKANL*RGDFRTWS 418
           L   + C  + LK G+Y  + +W   K+NL   D +T++
Sbjct: 19  LGVKKDCDEKALKKGYYRQSMRWHPDKSNLVEEDMQTYT 57


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/62 (17%), Positives = 26/62 (41%)
 Frame = -1

Query: 345 PFFKKRIHWRFVAKHTHVAQHWRFECAFNIVPDVAHVVGGRFEYLHTVIVIVFYNLAQVR 166
           P F   +   +V  H        +EC+ N    V H + G +     +++++ Y +  + 
Sbjct: 10  PVFDYNMTLLYVVFHNFELNKDAYECSKNETTHVFHTLRGSYYLTTGMLILILYTICLIA 69

Query: 165 VV 160
           ++
Sbjct: 70  II 71


>AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical
           protein Y19D10A.7 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 175 CKIIENNYNYCMQIFKAPADNMRDIRHNI 261
           CKI ENN N C    +   DN   +  N+
Sbjct: 220 CKICENNVNMCNDSLENLLDNCTHVNGNV 248


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 175 CKIIENNYNYCMQIFKAPADNMRDIRHNI 261
           CKI ENN N C    +   DN   +  N+
Sbjct: 265 CKICENNVNMCNDSLENLLDNCTHVNGNV 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,704,652
Number of Sequences: 27780
Number of extensions: 275349
Number of successful extensions: 749
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)