Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3885
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    26   3.7  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   6.5  

>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 36  IVSTDVYILFYQNTQVNGTYFK*MIRPWNMFK 131
           +V++  Y  FY + +  G +F  ++ P+N+FK
Sbjct: 11  LVASSYYGPFYPDGKNTGVHFSELLIPYNVFK 42


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 364 SGPVLPLKPLRYNRALKSYIFSNKIIRNLIHI 269
           +GP  P+  +RY RA+ S + S   ++ L+ +
Sbjct: 132 NGPTSPMNVMRYARAVSSALNSTMNLKFLVQL 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,675
Number of Sequences: 5004
Number of extensions: 38068
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)