Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3885
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173...    31   0.70 
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    30   1.2  
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235...    27   8.7  

>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
            32917396-32917552,32917695-32917753,32918180-32918291,
            32918901-32919050,32919180-32919316,32919977-32920123,
            32920197-32920298,32920674-32920731,32920840-32920941,
            32921905-32921942,32922031-32922157,32922228-32922401,
            32922542-32922628,32923838-32923947,32924654-32924714,
            32925338-32925515,32925628-32925833,32926108-32926227,
            32927202-32927423,32927708-32927847,32927976-32928087,
            32928254-32928304,32928384-32928473,32928630-32928800,
            32928897-32929049,32929860-32930036,32930131-32930268,
            32930363-32930433,32930837-32930936,32931156-32931212,
            32931301-32931357,32931451-32931531,32931614-32931696,
            32931831-32931966
          Length = 1459

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 230  NIVMFLYRILCCLNMNQIPDYFIRKNVT 313
            NIV FL  ++  L+ N +P +FIRK +T
Sbjct: 1249 NIVNFLDLLMSTLHANYVPSFFIRKLIT 1276


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 230  NIVMFLYRILCCLNMNQIPDYFIRKNVT 313
            NIV FL  ++  L+ N +P +FIRK +T
Sbjct: 1422 NIVKFLDLLMDTLHENYVPSFFIRKLIT 1449


>01_06_0910 -
           32922459-32922646,32922725-32922823,32923371-32923502,
           32923585-32923743,32924553-32924711,32924897-32925052,
           32925846-32926044
          Length = 363

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 336 NGFSGNTGPD*LCGCNKNGPRASGGNTSKNLPLKI 440
           +GF+ ++G   +CG    G   +G N  +NLP ++
Sbjct: 114 SGFATDSGQLFMCGDGSFGQLGAGDNHPRNLPFEV 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,571,821
Number of Sequences: 37544
Number of extensions: 229142
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)