Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3882
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0032 + 13927959-13930040,13930322-13930798 30 1.6
01_06_0355 + 28657833-28660665,28660762-28661126 29 3.6
11_03_0099 - 9983044-9983052,9983145-9983939,9984031-9984301,998... 29 4.8
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 4.8
02_05_1026 - 33598275-33599561 29 4.8
09_04_0321 - 16664316-16664939,16665369-16666262 28 6.4
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 28 6.4
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 28 8.4
>03_03_0032 + 13927959-13930040,13930322-13930798
Length = 852
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/86 (27%), Positives = 41/86 (47%)
Frame = +2
Query: 434 MLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNSKVTRDSVGF 613
ML + T +L+G ++ + I+D L+G+ +G S+ +H+S +T +
Sbjct: 106 MLDFMWATVVLLGGFASALKITDFWCVTVILVGEGARVFGRSHELEWQHHSTLTSTA--- 162
Query: 614 CRGTIIRSPGRLVEWNVGVLRQP*AA 691
G+ +RS RL V L P AA
Sbjct: 163 --GSALRSSSRLFRRLVHALDDPAAA 186
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 404 HNYHYYWEIKMLTDTYGTDILIGVGS-NKV---NISDPQFTFTSLIGQDEESYGLSY 562
H Y+E+ T+ + +D L+G GS KV N+ D Q ++ D E +S+
Sbjct: 759 HRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSF 815
>11_03_0099 -
9983044-9983052,9983145-9983939,9984031-9984301,
9984857-9985056
Length = 424
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 67 NNTNN*INGTFKENHCFY 14
NN N+ ING FK+N C++
Sbjct: 163 NNLNDSINGNFKKNDCYW 180
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 362 SSGTAVVRGNCPMIHNYH-YYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQD 538
+ G + N H +H +Y K L +GT +L G NK++ D F +I D
Sbjct: 173 NGGLEIKHDNDAGKHFFHQHYGSTKPLISFFGTKLLSDKGVNKLSEDDVLRCFMVIIYLD 232
Query: 539 EESYGL 556
+ +G+
Sbjct: 233 FKDFGI 238
>02_05_1026 - 33598275-33599561
Length = 428
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 187 IRPSLIFTIDLLAIIRFHCRIHLCNIRYVAKTHNSK 80
I PS++F + +LAI+ F C + +R++ + H +
Sbjct: 31 ISPSIVFIVAVLAIVFFVCGLLHLLVRHLLRLHRQR 66
>09_04_0321 - 16664316-16664939,16665369-16666262
Length = 505
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 424 PIIMVVMNHWAVSPDHCSTRTIEWMKSDLL 335
P+I +M ++ H +T T+EW ++LL
Sbjct: 291 PLIRALMTDLFIAGSHTTTTTVEWAMAELL 320
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Frame = +2
Query: 386 GNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLS-- 559
G+C HN+ +W ++ G + S +N+ + IG + S LS
Sbjct: 517 GSCTYAHNWLSFWPFQLK----GFPVGFNAPSASLNVQIQKLRSLFAIGPGDNSAELSQG 572
Query: 560 ----YTGAVRHNSKVTRDSVGFCRGTII 631
+ GAV+ +T DSV F G ++
Sbjct: 573 VGQIHPGAVQQTLPITLDSVYFNGGNLM 600
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 94 THNSKPKFCNNTNN*IN-GTFKENHCFYR 11
T +SKPKFC+ NN I+ G+ + N+ R
Sbjct: 632 TDSSKPKFCSAVNNSISRGSLERNNLMER 660
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,648
Number of Sequences: 37544
Number of extensions: 390419
Number of successful extensions: 1210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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