Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3880
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    29   0.38 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   6.2  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   8.2  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 249 KVNGFNANVRYEGHPVAQPAKIAYTTPVAKLAYS 350
           +VNG   + +YEG  V +P K  Y TP+A L +S
Sbjct: 558 RVNG--TDEQYEGATVIEPIKGYYDTPIATLDFS 589


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 22/65 (33%), Positives = 25/65 (38%)
 Frame = +3

Query: 291 PVAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVA 470
           PV   A      PVA +A   P V   PVA +   AP        PVA +A   P     
Sbjct: 566 PVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVP---QPPVAPVAPEVPSVPQR 622

Query: 471 YAAPV 485
            A PV
Sbjct: 623 PAVPV 627



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 21/69 (30%), Positives = 23/69 (33%)
 Frame = +3

Query: 291 PVAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVA 470
           P A     A   P A      P V   P A      PVA +A   P       APV   A
Sbjct: 542 PSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEA 601

Query: 471 YAAPVSKVA 497
            + P   VA
Sbjct: 602 PSVPQPPVA 610



 Score = 26.2 bits (55), Expect = 3.5
 Identities = 19/64 (29%), Positives = 23/64 (35%)
 Frame = +3

Query: 291 PVAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVA 470
           PVA         PVA +    P V   PVA +A   P      + PV   A + P    A
Sbjct: 581 PVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAA 640

Query: 471 YAAP 482
              P
Sbjct: 641 PVVP 644



 Score = 25.8 bits (54), Expect = 4.7
 Identities = 24/62 (38%), Positives = 28/62 (45%)
 Frame = +3

Query: 297 AQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYA 476
           AQP+ I  + P    A   PVV  AP      +APVA    SAP      AAPV   A +
Sbjct: 505 AQPSVITPSVPQPPAA---PVVPEAPSVHQPPAAPVAPEVPSAPQRP---AAPVVPEAPS 558

Query: 477 AP 482
            P
Sbjct: 559 VP 560


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 300 QPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAP--VAKIAYAA 452
           QPA  A TTPVA      PV  AA    +   AP    A +A   VA   YAA
Sbjct: 373 QPAAAAVTTPVAA-----PVAAAAAAVPVPPPAPAPAAAPAAEHVVALYDYAA 420


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 469 HTPPQSPK*PMMLAPLAHVTFS 534
           H     P  PM LAP AHV FS
Sbjct: 27  HAKSGHPGAPMGLAPAAHVLFS 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,528
Number of Sequences: 5004
Number of extensions: 21355
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)