Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3880
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0922 + 7278912-7279274,7281449-7281572,7282489-7282604,728... 30 1.6
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 29 2.1
04_04_0765 - 27910189-27912393,27912521-27912598 29 2.7
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980... 29 2.7
07_03_0295 - 16345592-16345947,16346265-16346697 29 3.6
07_01_0776 + 5983684-5983857,5983962-5984072,5984151-5984302,598... 28 4.8
08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429... 28 6.3
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 27 8.4
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 27 8.4
>01_01_0922 +
7278912-7279274,7281449-7281572,7282489-7282604,
7282683-7282748,7283379-7283413,7283559-7283601,
7284325-7284362,7284448-7284555,7287195-7287252,
7287862-7288003,7288215-7288426,7288544-7288778,
7288874-7288941,7290329-7290602,7291137-7291249,
7291330-7291390,7292170-7292237,7292585-7292622,
7292699-7292888
Length = 783
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 518 AKGASIIGYFGDWGGVCDLSDGGSIGDFG 432
A A+ +G + WGG DL DGG+ GD G
Sbjct: 6 AAAAAAMGMW--WGGEADLEDGGAGGDHG 32
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 297 AQP-AKIAYTTP--VAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKV 467
A+P AK A T P +++ A + A ++K A +AP A A + +A AA
Sbjct: 568 AKPKAKPAATVPSMMSRKAATTTTTAKAAMSKAAVTAPKAAAATAVAATAVAAAATAAST 627
Query: 468 AYAAPV 485
+ AAPV
Sbjct: 628 STAAPV 633
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 303 PAKIAYTTPVAKLA-YSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVA 470
PA +A +PVA +A +S P AA + A + + S A A+ +P VA
Sbjct: 411 PAVVAPDSPVAAVAVFSSPTAVAASSSPAASPVDIVAASSSPAAAVAAFGSPAVVVA 467
>04_03_0301 +
14094370-14094584,14096694-14096727,14098084-14098095,
14098400-14098574,14099064-14099299,14099396-14100457
Length = 577
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 261 FNANVRYEGHPVAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKI 440
+ V+ E +PAK P + A S + AP+A +A SAP A A + A +
Sbjct: 347 YELRVQIEDPVPIEPAKPPARAPATRPAASPAAPHVAPIAAVA-SAPAAPAAAARAAAPV 405
Query: 441 AYA 449
A
Sbjct: 406 RAA 408
>07_03_0295 - 16345592-16345947,16346265-16346697
Length = 262
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +3
Query: 288 HPVAQPA-KIAYTTPVAKLAYSDPVVYAAPVAKIAYSA---PVAKIAYSAPVAKIAYAAP 455
HP+ + I+Y T + + + V Y P ++Y A VA +AYS A
Sbjct: 154 HPLLEYMYNISYRTALKETPFKI-VYYRDPPTILSYEAVDTKVAVVAYSKAAHDELLADV 212
Query: 456 VTKVAYAAPVSKVAYDAG 509
+K+ +A V+K AYD G
Sbjct: 213 RSKLEHAHMVAKKAYDRG 230
>07_01_0776 +
5983684-5983857,5983962-5984072,5984151-5984302,
5984403-5984460,5984568-5984616,5984714-5984958,
5985129-5985206,5986016-5986246
Length = 365
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +3
Query: 285 GHPVAQPAKIAYTTPVAKLAYSDPVVYAA--PVAKIAYSAPVAKIA-YSAPVAKIAYAAP 455
GHP A PA+ A Y PV + P A AY A + A P A+ A AA
Sbjct: 50 GHPYAWPAQHLMAAAAAGAPYGAPVPFPMYHPGAAAAYYAHASMAAGVPYPTAE-AMAAA 108
Query: 456 VTKVAYAAPVSK 491
A A P K
Sbjct: 109 AAAAAGAVPEGK 120
>08_02_0685 +
20039318-20040433,20040574-20040982,20042906-20042973,
20043336-20043518,20043641-20043964,20045653-20045694
Length = 713
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 366 AAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTK-VAYAAPVSKVA 497
A VAK+A A + A + VAK A+ A K VA A ++K A
Sbjct: 125 AVAVAKVAVEAAAKEAATAVAVAKTAFEAAAAKGVAVAKALAKEA 169
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 305 GLSDGVSLVADVSVKSVYFVGGVLDDAVVTVG 210
G+ DG + VADV ++ GV+D A V VG
Sbjct: 256 GVDDGGAAVADVVLEDKELATGVVDAARVAVG 287
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 488 GDWGGVCDLSDGGSIG-DFGYRCAVGDLGNRS--AVGDLG 378
GD GGV + GG +G D+G G G RS A GD G
Sbjct: 351 GDGGGVVGVDGGGVVGDDWGGFAEGGGCGGRSGGAGGDWG 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,081
Number of Sequences: 37544
Number of extensions: 175232
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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