Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3880
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    33   0.20 
Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    31   0.80 
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +3

Query: 294 VAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIA-YSAPVAKIAYSAPVAKIAYAAPVTKVA 470
           VA PA +A T P    A S    Y  P    +  +AP+ + A  AP    A   P     
Sbjct: 448 VAAPADVATTAPETSSAQSAAGSYDVPSEPASEVTAPIVESATEAPSDSAAPIGPAASEP 507

Query: 471 YAAPVSKVAYDA 506
             AP+   A DA
Sbjct: 508 APAPIEAPATDA 519


>Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +3

Query: 252 VNG-FNANVRYEGHPVAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAP 428
           VNG F         PV  P       PV   A   P V AAP   +A  AP+  +A  AP
Sbjct: 28  VNGPFMGRYYVAAKPVLAPGVAPVAAPVLAAA---PTVLAAPAPLLAPPAPL--LAPPAP 82

Query: 429 VAKIAYAAPVTKVAYAAPVSKV 494
           V   A A       +AAP + V
Sbjct: 83  VLAAAPAFAAPAPVFAAPPAPV 104


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 291 PVAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYS-APVAKIAYAAPVTKV 467
           P A PA +   +     A + P++ A P    AY AP    AY+ AP+    +AAP    
Sbjct: 32  PCAAPA-VCQASVCIPTAAAPPMMMAPPAPLPAY-APAPLPAYAPAPLPAPVFAAPAPAP 89

Query: 468 AYAAP 482
            +AAP
Sbjct: 90  VFAAP 94



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 294 VAQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAY 473
           +A PA +    P    AY+ P    APV      APV    ++AP A +  A P   +  
Sbjct: 55  MAPPAPLPAYAPAPLPAYA-PAPLPAPVFAAPAPAPVFAAPFAAPPAPVIAAQPA--LGC 111

Query: 474 AAP 482
           AAP
Sbjct: 112 AAP 114


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 285 GHPVAQPAKIA--YTTPVAKLAYSD-PVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYA-A 452
           G P   PA  A  Y   +A  A++  PVV AAP    AY AP A +  +AP    AYA A
Sbjct: 58  GAPAYAPALAAPAYAPGLAAPAFAPAPVVAAAPALAPAY-AP-APVVAAAPAFAPAYAPA 115

Query: 453 PVTKVAYAA 479
           PV     AA
Sbjct: 116 PVASPMIAA 124



 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 354 PVVYAAPV-AKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYA-APVSKVA 497
           P V AAP  A  AY+  +   AY+  +A  AYA  +   A+A APV   A
Sbjct: 40  PAVAAAPAFAAPAYAPALGAPAYAPALAAPAYAPGLAAPAFAPAPVVAAA 89


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 354 PVVYAAPVAKI---AYSAPVAKIAYSAPVAKIAYAAPVTKVAY 473
           P   AAP A +   A  APV  +  +AP A +  AAP T  +Y
Sbjct: 192 PATTAAPAAGVTTTAAPAPVPVVPTAAPPAVVTTAAPATCTSY 234



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 372 PVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYAAPVSKVAY 500
           P    A +A V   A  APV  +  AAP   V  AAP +  +Y
Sbjct: 192 PATTAAPAAGVTTTAAPAPVPVVPTAAPPAVVTTAAPATCTSY 234


>Z70756-7|CAA94794.2|  199|Caenorhabditis elegans Hypothetical
           protein T06E4.8 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 321 TTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYAAPV 485
           +TPV     +     A P+A  A   P+A   +  P A +  AAP   +A  APV
Sbjct: 57  STPVLSAPVAKTAPSAIPLAAPALPVPIAAAPFFTPPAPV-LAAPAPLLAPPAPV 110


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 342 AYSDPVVYAAPVAKIA-YSAPV--AKIAYSAPVAKIAYAAPVTKVAYAAPVSKVAYDAG 509
           AY D  V  AP A  A   APV  A +A  AP A  A  AP    A  AP +  A D+G
Sbjct: 608 AYGDEQVTPAPAAAPAPADAPVEQAPVAVPAP-APAAAPAPDCGSAAPAPAAPAATDSG 665


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 291 PVAQPAKIAYTTPVAK--LAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTK 464
           PV Q A +A   P ++   A + PVV  AP  + A   PVA+     PV +    AP   
Sbjct: 196 PVVQ-APVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPVQQQPVVQ----APPKP 250

Query: 465 VAYAAPVSKVA 497
           +   APV + A
Sbjct: 251 IVQQAPVVQQA 261


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 303 PAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYAAP 482
           P + A   P A  A ++P+     V K+  +AP +K A +AP +     AP  +     P
Sbjct: 324 PPRGAPAKPAANTAKAEPIAQKKTVGKVQGTAP-SKPAPAAPASAATSPAPAPEAPRRDP 382


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 303 PAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYAAP 482
           P + A   P A  A ++P+     V K+  +AP +K A +AP +     AP  +     P
Sbjct: 324 PPRGAPAKPAANTAKAEPIAQKKTVGKVQGTAP-SKPAPAAPASAATSPAPAPEAPRRDP 382


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 303 PAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYAAP 482
           P + A   P A  A ++P+     V K+  +AP +K A +AP +     AP  +     P
Sbjct: 324 PPRGAPAKPAANTAKAEPIAQKKTVGKVQGTAP-SKPAPAAPASAATSPAPAPEAPRRDP 382


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 297 AQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAP 401
           A  A +A T   A+ AY+    Y A VA+ A +AP
Sbjct: 485 AMQAAVAQTAQAAQAAYAAEAAYQAQVAQQARAAP 519


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 297  AQPAKIAYTTPVAKLAYSDPVVYAAPVAKIAYSAP 401
            A  A +A T   A+ AY+    Y A VA+ A +AP
Sbjct: 1864 AMQAAVAQTAQAAQAAYAAEAAYQAQVAQQARAAP 1898


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 321 TTPVAKLAYSDPVVYAAPVAKIAYSAPVAKIAYSAPVAKIAYAAPVTKVAYAAPV 485
           +TPV     +     A P+A  A   PVA   + A  A +  AAP   +A  APV
Sbjct: 70  STPVLSAPVAKTAPSAIPLAAPALPVPVAAAPFFASPAPV-LAAPAPLLAPPAPV 123


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 78  YAEHEAPAHYDFEYSVHDQQSGDIKQQKESRAGDAVQGFYSLVQPDGDHRI 230
           Y+       YDF  S+  +    +K+Q E  A   V   Y L +PDG  ++
Sbjct: 162 YSMRNTQEKYDFGQSLKQETYEALKEQLEKLACKIVNNLY-LSEPDGPFQV 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,275
Number of Sequences: 27780
Number of extensions: 129744
Number of successful extensions: 458
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)