Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3877
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    28   7.0  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    28   7.0  
04_03_0636 + 18223229-18223489,18223975-18224519,18225018-182251...    28   7.0  

>12_02_0133 -
           14057469-14057497,14057516-14057581,14057770-14058363,
           14058450-14058570,14058926-14059320,14059410-14059534,
           14059646-14059876,14060012-14060484,14060587-14060693,
           14060842-14061172,14061222-14061250,14061345-14061901,
           14062170-14062255,14062344-14062406,14062646-14063001,
           14063101-14063356
          Length = 1272

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 552 KYCSLIRLSLPVVKTLKDRNMGT*TASR 469
           ++CS+ +LSL  VK + +RNM   +A R
Sbjct: 605 QFCSVDKLSLSAVKPMSERNMKDSSAKR 632


>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -2

Query: 540  LIRLSLPVVKTLKDRNMGT*TASRPYDGGADTRQRSMTRFNLYLKVSSSNKIFVNFSSYE 361
            L+   L  + T +DRNM +      Y   A+TRQ    R N Y    S N++   F    
Sbjct: 1932 LLESILQFLTTARDRNMASLVCRYWYHAEAETRQELFIR-NCY--AVSPNRVIERFRGLR 1988

Query: 360  HHWLKAR 340
               LK R
Sbjct: 1989 SITLKGR 1995


>04_03_0636 +
           18223229-18223489,18223975-18224519,18225018-18225104,
           18225187-18225243,18225391-18225629,18225809-18225942,
           18226175-18226261,18226382-18226438
          Length = 488

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +1

Query: 442 SCVRPTIIRTGSSSCAHIPVLQSFYYGKGESNQTAIFN*ARTFTTQRRTINIFLR 606
           + V P ++ +G+++  H+PV     YG G  ++ A    A  +      +  ++R
Sbjct: 180 NAVMPVMLSSGAAAACHLPVCWLLVYGAGLGSKGAALANAVAYLANAAALAAYVR 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,616,228
Number of Sequences: 37544
Number of extensions: 329520
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)