Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3872
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    37   0.003
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    29   0.89 
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.2  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.7  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   6.3  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.3  

>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
 Frame = +3

Query: 78  SPSMISLFCLYGYSLSIYIPVA-------IFWTIQISWLQWLFVLMAAFVSGAVLIFWLL 236
           +P ++   CLYGY+  +++PV+       +  T+    ++++   +   +S   L   L 
Sbjct: 155 NPKLLDCLCLYGYANIVWLPVSLATPPFGLLSTLASHIVKYVLTGIGLLISIVFLTRNLY 214

Query: 237 PALKK--SKYFYMLVGSILAFHFLLATGFMLYFFS 335
           P  ++  S    +L+  I+ FH LLA    L FFS
Sbjct: 215 PICQQAGSNLCKLLLFGIIVFHCLLALSLQLIFFS 249


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 694  ISCSIDLWSLKTTPKDFVNLLALVMLYVNTFLFNFFIALVGR 569
            +S  ++L  L+  PKD  NL+  ++  +N  LFN    + GR
Sbjct: 1121 LSTILNLKELECEPKDHANLILKIIQILNGLLFNHRSYMSGR 1162



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 295 ISCWQLVLCYTSFHGPNAVSAPGVPVTPVSGYCCCSSIICNFSKTFTYIMNNYIFN*VH 471
           I C   +LCY+S +  + VSAPG      S    CSS+     K   +++ + I   +H
Sbjct: 704 IDCLIRLLCYSSNNAIDPVSAPGNLDFDNSAE-LCSSLTRFTPKNIDFVLKSLIHIPIH 761


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 105 LYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAF-VSGAVLIFWLLP 239
           +Y   +  Y+P    WTI  +  +W+F ++A+F +  ++ I W+ P
Sbjct: 113 IYSPHIKDYLP----WTISCTKNEWVFDMLASFSIENSLRIKWVAP 154


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = +3

Query: 81  PSMISLFCLY-GYSLSIYIPVAIFWTIQIS-W--LQWL-FVL---MAAFVSGAVLIFWLL 236
           P +     LY  + +++ IP+ + W + +S W  L WL FVL   +  FV G +   +  
Sbjct: 89  PGIFVFLGLYVPFVVTLLIPIDVTWDVSLSIWRFLYWLTFVLSWIILPFVQGYMESKFST 148

Query: 237 PALKKSKYFYMLVGSILAFHFL 302
           P  + S  FY  +   L   FL
Sbjct: 149 PRSRLSDSFYKNLRYYLLLTFL 170


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 23/101 (22%), Positives = 44/101 (43%)
 Frame = +3

Query: 69  TSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALK 248
           TS    +I++ C     L+I+I + I   +   ++   F  +AA +    ++F   P   
Sbjct: 49  TSVGLLLITIICHLFLLLNIFISIPIISHLSPGFMPVGFTALAAILLAMQIMFVYSPNAP 108

Query: 249 KSKYFYMLVGSILAFHFLLATGFMLYFFSRTKRSKRSWRAS 371
           +      +   I+ F  LLA   ++ F S   R +  WR++
Sbjct: 109 ER-----VTQRIICF--LLAIDVLVVFLSPILRHREGWRSN 142


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +3

Query: 123 SIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILAFHFL 302
           S +IP+A+FW   + W  +  V  AA +   + + W    +    Y Y+    +  +H +
Sbjct: 425 SFFIPIALFW---LGWTCYPSVHWAAPMVSGIFLGWGFLYVLAVCYSYL----VDCYHEM 477

Query: 303 LATGFMLYFFSR 338
            A+   +  F+R
Sbjct: 478 AASALSVATFTR 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,750
Number of Sequences: 5004
Number of extensions: 66421
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)