Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3872
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497... 54 2e-07
05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493... 50 2e-06
11_06_0177 + 20936072-20937550 31 1.2
11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335,240... 30 2.1
10_01_0284 + 2969965-2970136,2970240-2970703 29 3.7
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 29 4.9
10_01_0280 - 2945929-2946437,2946541-2946649 28 6.5
10_01_0279 - 2938189-2938697,2938800-2938965 28 6.5
10_01_0276 - 2921149-2921657,2921760-2921910 28 6.5
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 28 6.5
02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941 28 6.5
10_01_0286 - 2978630-2979075,2980050-2980194 28 8.6
06_02_0197 - 12912818-12913411,12913505-12913732 28 8.6
06_02_0167 + 12529281-12529597,12530358-12530475 28 8.6
04_01_0525 - 6886920-6887298,6888650-6888882 28 8.6
>01_05_0668 -
24147412-24147618,24148019-24148286,24149506-24149728,
24149822-24149996
Length = 290
Score = 53.6 bits (123), Expect = 2e-07
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +3
Query: 30 TTLPDGQDEIETQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVS 209
T +P G I S ++ L+CLYGYSL I+IP ++ + I +W+ +A F+S
Sbjct: 185 TFVPLGLYVILKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAGVAGFMS 244
Query: 210 GAVLIFWLLPALKKS-KYFYMLVGSILAFHFLLATGFMLYFFSRT 341
+ L + S + ++++V I LA LYFF+ T
Sbjct: 245 ATFVAMNLRAHIVNSGERWFLIVAGIFLLQLGLAVLLKLYFFTIT 289
>05_05_0081 +
22248963-22249016,22249120-22249165,22249259-22249357,
22250178-22250337,22250858-22251128,22251295-22251486
Length = 273
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/85 (27%), Positives = 45/85 (52%)
Frame = +3
Query: 81 PSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
PS++ +C++GYSL I+IP ++ I + +L+W+ +++ S + I L +
Sbjct: 190 PSLVRFWCMWGYSLFIFIPASVLLLIPVEFLRWVIIILVGGAS-SWFISLNLKECTEGAD 248
Query: 261 FYMLVGSILAFHFLLATGFMLYFFS 335
+L+ S F LA ++FF+
Sbjct: 249 MMVLIASAAVLQFTLALFIKVFFFA 273
>11_06_0177 + 20936072-20937550
Length = 492
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 462 LSTLIAVGSGLALPLALPEVHGPTVTTHHQVGPYA-RLPTRAIKKLNKNVLTYSMTKANK 638
+S L +G G +LP+ + EV PT H PYA R + +K+L T +A
Sbjct: 253 VSALKRIGFG-SLPIVIGEVGWPTDGDKHATVPYAQRFYSGLLKRLAARRGTPLRPRARI 311
Query: 639 LTKSFGVVFNDHKSI 683
FG++ D KS+
Sbjct: 312 EVYLFGLMDEDTKSV 326
>11_01_0320 -
2406706-2406943,2407297-2407385,2407463-2408335,
2408882-2409310
Length = 542
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -3
Query: 597 LIFLLPL*ADEHTGPPDGEWLPSAHGLQAMPGAEPSRCLPLSMYLIKNIIIHYVCKCLG- 421
L+FL ADE+ PP + +AHG P + P + + +SM KN+ I +V L
Sbjct: 110 LVFLCARGADEYVRPPPSPLVLTAHG---KPASHPQQ-VHISMVGEKNMRISWVTDDLNA 165
Query: 420 -EVTNYGAA 397
V YG +
Sbjct: 166 PSVVEYGTS 174
>10_01_0284 + 2969965-2970136,2970240-2970703
Length = 211
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 591 FLLPL*ADEHTGPPDG-EWLPSAHGLQAMPGAEPSRCLPLS 472
F +PL AD+ G D L SA PG EPS+ +PLS
Sbjct: 86 FSVPLAADDLHGAADCFAQLHSAESSTPCPGQEPSKIVPLS 126
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 12 WGVLKWTTLPDGQDEIETQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVL 191
WG L W +P + T+T+ +S L+ + ++ F ++ S ++F
Sbjct: 397 WGPLGWL-IPSETFPLATRTTGFSFAVSSNMLFTFLIA-----QAFLSMMCSMKAFIFFF 450
Query: 192 MAAF-VSGAVLIFWLLPALK 248
A + V A +FWLLP K
Sbjct: 451 FAIWIVIMAAFVFWLLPETK 470
>10_01_0280 - 2945929-2946437,2946541-2946649
Length = 205
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 591 FLLPL*ADEHTGPPDG-EWLPSAHGLQAMPGAEPSRCLPLS 472
F +PL AD+ G D L SA PG EPS+ +PLS
Sbjct: 65 FSVPLAADDLHGAADCFAQLHSATSSTPCPGQEPSKIVPLS 105
>10_01_0279 - 2938189-2938697,2938800-2938965
Length = 224
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 591 FLLPL*ADEHTGPPDG-EWLPSAHGLQAMPGAEPSRCLPLS 472
F +PL AD+ G D L SA PG EPS+ +PLS
Sbjct: 84 FSVPLAADDLHGAADCFAQLHSAASSTPCPGQEPSKIVPLS 124
>10_01_0276 - 2921149-2921657,2921760-2921910
Length = 219
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 591 FLLPL*ADEHTGPPDG-EWLPSAHGLQAMPGAEPSRCLPLS 472
F +PL AD+ G D L SA PG EPS+ +PLS
Sbjct: 79 FSVPLAADDLHGAADCFAQLHSAASSTPCPGQEPSKIVPLS 119
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 180 LFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILAFHFLLATG 314
L V + F++ +IFWL P+L +Y S++A + + +G
Sbjct: 70 LGVSVGYFIADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSG 114
>02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941
Length = 234
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +3
Query: 75 NSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKS 254
+SPS+++L LY L+++ P T S +F+ A+FV+GAV+ PA
Sbjct: 20 HSPSLVTL--LYSPLLNLFTPPPATTTTLYSG-DIMFINTASFVAGAVVASPEQPAKLVR 76
Query: 255 KYFYMLVGSILAFHFLLATGFMLY 326
++ GS A + GF Y
Sbjct: 77 DQRRVVPGSCRARRGAASNGFRTY 100
>10_01_0286 - 2978630-2979075,2980050-2980194
Length = 196
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 591 FLLPL*ADEHTGPPDGEWLPSAHGLQAMPGAEPSRCLPLS 472
F +PL AD + +AH A PG EPSR + LS
Sbjct: 78 FRVPLAADLRGADCVAQLHSAAHNNAACPGQEPSRVMQLS 117
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 94 LSSVYMAIRFPFTSLWLYSGPFRSLGSS 177
LS +AI P WLYSG + +LG S
Sbjct: 4 LSDEALAIVVPIVVYWLYSGLYMALGHS 31
>06_02_0167 + 12529281-12529597,12530358-12530475
Length = 144
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 171 LQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
L W +LMA V A+ +W +P + ++Y
Sbjct: 78 LAWRIILMAGAVPAALTYYWRMPMPETARY 107
>04_01_0525 - 6886920-6887298,6888650-6888882
Length = 203
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 510 LPEVHGPTVTTHHQVGPY 563
+PE P V HH+VGPY
Sbjct: 167 IPEDQKPLVVGHHEVGPY 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,549,413
Number of Sequences: 37544
Number of extensions: 445030
Number of successful extensions: 1235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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