Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3871
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.16 
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    29   0.64 
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    28   1.1  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    27   2.6  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.0  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.9  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   7.9  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 129  PDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQG--SSGYTAPDGTPIQITYIADANG 302
            PD   +      G  G+E     + G   A+   +G  S GYT+P  + +   Y   +  
Sbjct: 1500 PDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557

Query: 303  YQPSGAHLPTTPAPVP-IPDYIARAIEYIRTHP 398
            Y PS     T+PA +P  P Y   +  Y  T P
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
 Frame = -3

Query: 429 LKYVGRPLAWV-GEF*CTRWPGRCNLGLGQGLG*-WADGHPKA----GIRW---RQQCK* 277
           L Y  RP  W  G F   + P  C +G G+       + H KA    GI       +   
Sbjct: 141 LDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMP 200

Query: 276 SEWEYHQGQCSRLNLG-RRWM 217
           S+WEY  G C+ + +G + WM
Sbjct: 201 SQWEYQVGPCAGIEMGDQLWM 221


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 355 QITSPGPSSTSELTHPSQRSANVFKLYD 438
           Q+T+   S TS +THP Q S +V   +D
Sbjct: 152 QLTTENSSDTSSMTHPVQPSPSVLGSFD 179


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = +3

Query: 99  QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQI 278
           Q+ ++ +D+ PD        S G    E    + +   +    V  SS +    G    +
Sbjct: 96  QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155

Query: 279 TYIADANGYQPSGAHLPTTPAPVP 350
           T+ A   GY P+     T P P P
Sbjct: 156 TFAAARRGYGPALPGSYTIPEPNP 179


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 189 ALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 344
           AL+  G    S  VQ  + YT+  G P   T +A A  +  +G ++    +P
Sbjct: 43  ALLPTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 319 PICPLPQPLSQSQITSPGPSSTSELTHPSQRSANV 423
           P  P P P S   I S  P   S L  P+Q +A V
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 467 CFNNSRPYQLSYNLNTLADLWLGWV 393
           CF+   P Q   NL + A+LW  W+
Sbjct: 372 CFDGYLPAQERSNLKSKAELWNEWM 396


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 633 FSGANSLLRTGYQHFMWFFNLKK 565
           F   N+ L T YQH +W   L +
Sbjct: 45  FRSPNTPLHTNYQHVLWALKLSR 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,316
Number of Sequences: 5004
Number of extensions: 64758
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)