Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3870
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   5.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.9  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    25   8.9  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   8.9  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = -2

Query: 450 QTSVNVINISKLKKSTKINQKPIIVIRVRVNFNMVYFKYKNNLITQFSKTKLCHFLYFVF 271
           Q   + +N+SK     K+ Q+   +I +   F  VYFK  +N+I+ F+      F+ F  
Sbjct: 331 QWKSDFLNVSK--DHLKVLQQLRPLIDIVEKFMNVYFKGLSNIISSFA------FIGFTL 382

Query: 270 LFIIR*LHYYILTFHR 223
              +  L + +L  HR
Sbjct: 383 FATLSSLFFKVLKIHR 398


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 387 PIIVIRVRVNFNMVYFKYKNNLITQFSKTKLCHFLYFVF 271
           P  ++   + FNMV++   ++    FS   L  FLY +F
Sbjct: 408 PGFMLAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLLF 446


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 LPTNNLRFRFNLCTIISCL 194
           +P N L +R NLC++  CL
Sbjct: 206 VPGNELIYRENLCSVAQCL 224


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 432 INISKLKKSTKINQKPIIVIRVRVNFNMVYFKYKN 328
           IN +  K++  IN KPI++   R + + +YF   N
Sbjct: 140 INKATSKRTDLINDKPIVIPIPRASTSTLYFGKHN 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,655
Number of Sequences: 5004
Number of extensions: 57017
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)