Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3870
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0074 - 19821699-19823702                                         29   5.3  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     28   9.3  

>11_06_0074 - 19821699-19823702
          Length = 667

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 468 KRALVLPSLFSGTKLNSRYKYNPGDYRLNKNQI*VSQ-VIVSSENSSDRPSKSGFCMI 638
           K+ +    +FS + +++  K+N G +R N  +I   + + V + NSS    KS FC +
Sbjct: 336 KKGMQSAGIFSSSIISNPQKHNFGIFRSNDVRIFTKKDISVITNNSSHLLGKSTFCNV 393


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 142 GSGLALPLALLKSMSDGNHSPSGGPYARL 56
           GS LA  L LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,623,041
Number of Sequences: 37544
Number of extensions: 330148
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)