Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3870
         (760 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC109305-1|AAI09306.1|  840|Homo sapiens ATPase, H+ transporting...    30   7.9  
BC109304-1|AAI09305.1|  840|Homo sapiens ATPase, H+ transporting...    30   7.9  
AF245517-1|AAG11415.1|  840|Homo sapiens vacuolar proton pump 11...    30   7.9  

>BC109305-1|AAI09306.1|  840|Homo sapiens ATPase, H+ transporting,
           lysosomal V0 subunit a4 protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 432 INISKLKKSTKINQKPIIVIRVRVNFNMVYFKYKNNLITQFSKTK---LCHFLYFVFLFI 262
           +N  K+K S  +    ++   +   FN +YF+   N+I QF       LC F Y VF+ I
Sbjct: 536 LNSYKMKMSVILGIVQMVFGVILSLFNHIYFRRTLNIILQFIPEMIFILCLFGYLVFMII 595

Query: 261 IR 256
            +
Sbjct: 596 FK 597


>BC109304-1|AAI09305.1|  840|Homo sapiens ATPase, H+ transporting,
           lysosomal V0 subunit a4 protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 432 INISKLKKSTKINQKPIIVIRVRVNFNMVYFKYKNNLITQFSKTK---LCHFLYFVFLFI 262
           +N  K+K S  +    ++   +   FN +YF+   N+I QF       LC F Y VF+ I
Sbjct: 536 LNSYKMKMSVILGIVQMVFGVILSLFNHIYFRRTLNIILQFIPEMIFILCLFGYLVFMII 595

Query: 261 IR 256
            +
Sbjct: 596 FK 597


>AF245517-1|AAG11415.1|  840|Homo sapiens vacuolar proton pump 116
           kDa accessory subunit protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 432 INISKLKKSTKINQKPIIVIRVRVNFNMVYFKYKNNLITQFSKTK---LCHFLYFVFLFI 262
           +N  K+K S  +    ++   +   FN +YF+   N+I QF       LC F Y VF+ I
Sbjct: 536 LNSYKMKMSVILGIVQMVFGVILSLFNHIYFRRTLNIILQFIPEMIFILCLFGYLVFMII 595

Query: 261 IR 256
            +
Sbjct: 596 FK 597


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,636,810
Number of Sequences: 237096
Number of extensions: 1937901
Number of successful extensions: 2809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2809
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)