Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3868
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.75 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   3.0  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   5.3  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   5.3  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   7.0  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 505 DG-HRKIDVLFSEENHRDEINKQTFRRNICLYIITMNCNLIYKNESVQCMYMYNSRTP 335
           DG + K++ L    N R  +N +TF     L+++ +    ++   S  CM + NS  P
Sbjct: 215 DGPYHKVEKLLKSANIRSSLNSKTFNDFRTLFLLLIRDYSLFHGNSSHCM-LANSMLP 271


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 624 KDPPKSCEA---PIIEQKRGRHTRSTVDESEPTRDRPRDPARVMGTGKL 487
           K PPK  +    PII++KRGR  +          D P  P R  G  +L
Sbjct: 108 KYPPKPIDEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGRGRPRL 156


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 639 LSSKTKDPPKSCEAPIIEQKRGRHTRSTVDESEPTRDRPRD 517
           + +K ++  K+      ++K+G+H +ST++  E    R R+
Sbjct: 111 VEAKIREAAKNLMVAQAKEKKGKHKQSTIEHYEQCSRRVRE 151


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 487 DVLFSEENHRDEINKQTF--RRNICLYIITMNCNLIYKNESVQCMY 356
           D+L+ E+    E N + F  R  +  +     CNL+Y+N  ++ +Y
Sbjct: 462 DLLYDEDALTLERNSRDFAERSQVINHNAETICNLLYQNPKIKTLY 507


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 612 KSCEAPIIEQKRGRHTRSTVDESEPTRDRPRDP 514
           K  EAP+++   GR+ R +V     T  + R+P
Sbjct: 258 KKLEAPLLQGFLGRNLRESVQNGIQTNHKHRNP 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,486
Number of Sequences: 5004
Number of extensions: 52782
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)