Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3868
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0341 - 4442727-4445597                                           30   1.3  
03_01_0173 + 1407891-1408097,1409746-1410123                           30   1.8  
05_04_0441 - 21271106-21271495,21271608-21271751,21272639-212727...    27   9.5  

>04_01_0341 - 4442727-4445597
          Length = 956

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -1

Query: 472 EENHRDEINKQTFRRNICLYIITMNCNLIYKNESVQCMYMYNSRTPATDWIILFCCIFLW 293
           EE+ R EI     RR I    + + C LI  N S   + + +   P  DW  L     LW
Sbjct: 44  EESSRAEI--ADIRREIYRTFMDLTCLLILNNGSDHTLDIASFGFPLNDWYNLRDNRLLW 101

Query: 292 SGEGS*ERKLRTKFENLRINNHHIKFSND 206
           +  G    +L  K  +  +++ H+   ND
Sbjct: 102 TFRG--RLRLNPKIAD-NVDSSHLNIFND 127


>03_01_0173 + 1407891-1408097,1409746-1410123
          Length = 194

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -1

Query: 598 SHHRTKEREAHTFNCGRVGADT*PTPRPSAGDGHRKIDVLFSEENHRDEINKQTFRRNIC 419
           SH  + +   H+    RV   + P+ RP+A D H ++      + H +  +K +  +N  
Sbjct: 88  SHKESNQPLVHSGTV-RVALHSSPSSRPAAQDSHARVVFTLQGKTHHELHSKPSLGQNES 146

Query: 418 LYIITMNC 395
             +  M C
Sbjct: 147 TALTAMQC 154


>05_04_0441 -
           21271106-21271495,21271608-21271751,21272639-21272746,
           21272846-21272859,21273103-21273154,21273592-21273656,
           21274447-21274579,21275260-21275341,21275639-21275715,
           21276037-21276093
          Length = 373

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 314 KNYPICCRRSRVIHVHTLHRFIFIDKITVH 403
           KNY  CC  +++IH+  L + I  D I  H
Sbjct: 286 KNYRHCCAPTKMIHISALPQEITEDAILNH 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,645,763
Number of Sequences: 37544
Number of extensions: 316743
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)