Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3867
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 280 1e-76
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 159 3e-40
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 64 1e-11
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 27 3.1
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 7.1
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 25 7.1
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 7.1
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.4
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 280 bits (687), Expect = 1e-76
Identities = 128/188 (68%), Positives = 162/188 (86%), Gaps = 1/188 (0%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST 212
I YRKNEVFLDVIESVNL+A ++G V++SEI+G ++++ YLSGMPELRLGLNDKVLFE+
Sbjct: 163 IHYRKNEVFLDVIESVNLIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAA 222
Query: 213 GRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESV 389
GR K +VE+EDVKFHQCVRL+RFENDRTISFIPPDGEF+LMSYR++++V+PLIW+E
Sbjct: 223 GRTIKGNTVEMEDVKFHQCVRLARFENDRTISFIPPDGEFDLMSYRMSSNVRPLIWVECE 282
Query: 390 IERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAIT 569
H+ SR+E+M+KAK+QFK+R ANNV+IIIPVP DADSP+F+T+ G V+Y PEQ A+
Sbjct: 283 SIVHSGSRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMV 342
Query: 570 WSIKSFPG 593
W+IK F G
Sbjct: 343 WNIKKFAG 350
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 159 bits (386), Expect = 3e-40
Identities = 83/201 (41%), Positives = 119/201 (59%), Gaps = 14/201 (6%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFE-S 209
IKYRKN +++D++E +NLL +S GNVLRS++ G +KMR LSGMPE + GLNDK+ F+
Sbjct: 173 IKYRKNSIYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLK 232
Query: 210 TGRGKSKS-------------VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRL 350
KSKS V LED +FHQCVRL FEN+ I+FIPPDGE ELMSYR
Sbjct: 233 QSESKSKSNNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRS 292
Query: 351 NTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTI 530
+ ++ I ++E+ + ++ Y I ++ + + ++++ IPVP + +
Sbjct: 293 HENINIPFRIVPIVEQLSKQKIIYRISIRADYPHK-LSSSLNFRIPVPTNVVKANPRVNR 351
Query: 531 GSVKYTPEQNAITWSIKSFPG 593
G Y P +N I W I F G
Sbjct: 352 GKAGYEPSENIINWKIPRFLG 372
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 64.5 bits (150), Expect = 1e-11
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 5/187 (2%)
Frame = +3
Query: 36 KYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTG 215
KY NE F+ V+E V+ + NG + + ++ + +SGMP L L L
Sbjct: 172 KYATNEFFIHVLERVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLR--------- 222
Query: 216 RGKSKSVELEDVKFHQCVRLSRF-ENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVI 392
+L +V+FHQ V L R+ ++ I FIPPDG+F L S++ + + + + V+
Sbjct: 223 ----PGTKLGNVRFHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQTDFATQKSLPV--VV 276
Query: 393 ERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADS---PKFKTTIGSVKYT-PEQN 560
E A ++++ + + + + + N++I+I +P S + + KYT E+
Sbjct: 277 E--AKNKLDGRFEVRIRNTGKKSVENLKILITIPQALKSVTVTEGNYIFRASKYTHMEEG 334
Query: 561 AITWSIK 581
+ WS+K
Sbjct: 335 ILEWSVK 341
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -2
Query: 301 MVLSFSKRDN-----LTH*WNFTSSNSTDFDFPLPVLSNKTLSFKPKRNSGIPDKYTLIL 137
+V F K+DN L + F++ ++ F L LS ++ K N GIP+K+ + L
Sbjct: 19 LVSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSFQ-SLKINKGIPEKHKIPL 77
Query: 136 IA 131
I+
Sbjct: 78 IS 79
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -3
Query: 240 TPQTLIFLCRYFQI 199
TP+TL+ LCR F++
Sbjct: 678 TPETLVLLCRQFEL 691
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 232 DFDFPLPVLSNKTLSFKPKRNSGIPDKYTLILIAPTISLLSTLP 101
DF++P L F R G+ ++ +AP + +STLP
Sbjct: 15 DFEYPTESLREAVKEFDELRQKGLQKNGEVLAMAP--AFISTLP 56
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 385 LLLSVMLIQELNT**KLSLSLRDDQLLITLKSLYQFL 495
+LLS IQ+LNT L+LS + LK + Q L
Sbjct: 867 VLLSSSFIQQLNTVENLNLSFNSTDAVYHLKKILQDL 903
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 571 HVIAFCSGVYLTLPIVVLNFGE----SASAGTGIMISTLLAVDRLLN 443
H++ C +Y L IVV FG S G G+ +A+ R++N
Sbjct: 184 HLLVNCVAIYSFLSIVVYKFGVWKALSVYLGAGV-FGNYVALQRMMN 229
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 508 HQNSRQQLVALNIHQNKMRSHGQSNHFQGGKGVLNESSLWS 630
+Q + QQL L+I++ K RSH S+ + V E++ S
Sbjct: 62 YQRTLQQLNTLSIYELKNRSHFSSSPVEESSTVSPETTTGS 102
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +3
Query: 186 NDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNT 356
+DK E +GK+KS + +F F ++++ + P+ E+ S + +T
Sbjct: 132 HDKAFHERVDQGKNKSSTTKYQEFRTVADYREFSPGQSVNSLKPNSGDEVPSTKSST 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,539
Number of Sequences: 5004
Number of extensions: 49315
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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