Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3867
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 340 5e-94
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 340 5e-94
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 310 8e-85
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 163 1e-40
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 163 1e-40
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 163 1e-40
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 89 2e-18
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 34 0.076
U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical ... 28 6.6
AB038044-1|BAB62394.1| 852|Caenorhabditis elegans N-deacetylase... 28 6.6
AB037942-1|BAB61757.1| 814|Caenorhabditis elegans N-deacetylase... 28 6.6
AB037941-1|BAB61756.1| 826|Caenorhabditis elegans N-deactylase/... 28 6.6
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 27 8.7
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 8.7
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 8.7
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 27 8.7
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 27 8.7
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 8.7
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 340 bits (836), Expect = 5e-94
Identities = 159/187 (85%), Positives = 177/187 (94%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST 212
IKYRKNEVFLDVIESVN+LA++NG VL+SEIVG++KMRVYL+GMPELRLGLNDKVLFE +
Sbjct: 163 IKYRKNEVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGS 222
Query: 213 GRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVI 392
GRGKSKSVELEDVKFHQCVRLSRF+ DRTISFIPPDG FELMSYRL T VKPLIWIE+ I
Sbjct: 223 GRGKSKSVELEDVKFHQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSI 282
Query: 393 ERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITW 572
ERH+HSRV ++IKAKSQFKRRSTANNVEIIIPVP+DADSPKFKT+IGSVKYTPEQ+A W
Sbjct: 283 ERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVW 342
Query: 573 SIKSFPG 593
+IK+FPG
Sbjct: 343 TIKNFPG 349
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 340 bits (836), Expect = 5e-94
Identities = 159/187 (85%), Positives = 177/187 (94%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST 212
IKYRKNEVFLDVIESVN+LA++NG VL+SEIVG++KMRVYL+GMPELRLGLNDKVLFE +
Sbjct: 163 IKYRKNEVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGS 222
Query: 213 GRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVI 392
GRGKSKSVELEDVKFHQCVRLSRF+ DRTISFIPPDG FELMSYRL T VKPLIWIE+ I
Sbjct: 223 GRGKSKSVELEDVKFHQCVRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSI 282
Query: 393 ERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITW 572
ERH+HSRV ++IKAKSQFKRRSTANNVEIIIPVP+DADSPKFKT+IGSVKYTPEQ+A W
Sbjct: 283 ERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVW 342
Query: 573 SIKSFPG 593
+IK+FPG
Sbjct: 343 TIKNFPG 349
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 310 bits (760), Expect = 8e-85
Identities = 146/192 (76%), Positives = 167/192 (86%), Gaps = 5/192 (2%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST 212
IKYRKNEVFLDVIESVN+LAN+ G VLRSEIVG+I+ RV LSGMPELRLGLNDKV F+ +
Sbjct: 162 IKYRKNEVFLDVIESVNMLANAQGTVLRSEIVGSIRFRVVLSGMPELRLGLNDKVFFQQS 221
Query: 213 G----RGKS-KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIW 377
G RG S K VELED+KFHQCVRLSRF+++RTISFIPPDGEFELMSYRL T VKPLIW
Sbjct: 222 GASSRRGNSGKGVELEDIKFHQCVRLSRFDSERTISFIPPDGEFELMSYRLTTQVKPLIW 281
Query: 378 IESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQ 557
+E+ +ERHAHSRVEYM+KAKSQFKR+S AN+VE+IIPVP+D +PKFKT G+ KY PE
Sbjct: 282 VEAAVERHAHSRVEYMVKAKSQFKRQSVANHVEVIIPVPSDVSAPKFKTGAGTAKYVPEL 341
Query: 558 NAITWSIKSFPG 593
NAI WSI+SFPG
Sbjct: 342 NAIVWSIRSFPG 353
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 163 bits (395), Expect = 1e-40
Identities = 80/199 (40%), Positives = 115/199 (57%), Gaps = 8/199 (4%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST 212
IKYR+NE+FLDVIE VNLL N G VL + + G + M+ YLSGMPE + G+NDK+ E
Sbjct: 170 IKYRRNELFLDVIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGK 229
Query: 213 GRGKSK--------SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKP 368
+ S +V ++D +FHQCV+L++FE + ISFIPPDGE+ELM YR ++
Sbjct: 230 SKPGSDDPNKASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQL 289
Query: 369 LIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYT 548
+ ++ + +++E + KS FK A +E+ IP P + + G KY
Sbjct: 290 PFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYK 349
Query: 549 PEQNAITWSIKSFPGRQGS 605
+NAI W IK G + S
Sbjct: 350 AGENAIVWKIKRMAGMKES 368
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 163 bits (395), Expect = 1e-40
Identities = 80/199 (40%), Positives = 115/199 (57%), Gaps = 8/199 (4%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST 212
IKYR+NE+FLDVIE VNLL N G VL + + G + M+ YLSGMPE + G+NDK+ E
Sbjct: 164 IKYRRNELFLDVIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGK 223
Query: 213 GRGKSK--------SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKP 368
+ S +V ++D +FHQCV+L++FE + ISFIPPDGE+ELM YR ++
Sbjct: 224 SKPGSDDPNKASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQL 283
Query: 369 LIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYT 548
+ ++ + +++E + KS FK A +E+ IP P + + G KY
Sbjct: 284 PFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYK 343
Query: 549 PEQNAITWSIKSFPGRQGS 605
+NAI W IK G + S
Sbjct: 344 AGENAIVWKIKRMAGMKES 362
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 163 bits (395), Expect = 1e-40
Identities = 80/199 (40%), Positives = 115/199 (57%), Gaps = 8/199 (4%)
Frame = +3
Query: 33 IKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFEST 212
IKYR+NE+FLDVIE VNLL N G VL + + G + M+ YLSGMPE + G+NDK+ E
Sbjct: 170 IKYRRNELFLDVIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGK 229
Query: 213 GRGKSK--------SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKP 368
+ S +V ++D +FHQCV+L++FE + ISFIPPDGE+ELM YR ++
Sbjct: 230 SKPGSDDPNKASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQL 289
Query: 369 LIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYT 548
+ ++ + +++E + KS FK A +E+ IP P + + G KY
Sbjct: 290 PFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYK 349
Query: 549 PEQNAITWSIKSFPGRQGS 605
+NAI W IK G + S
Sbjct: 350 AGENAIVWKIKRMAGMKES 368
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 89.4 bits (212), Expect = 2e-18
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 3/187 (1%)
Frame = +3
Query: 27 RSIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFE 206
+ +KY NE + DVIE ++++ + G+ + +EI G + + LSGMP+L + L + L
Sbjct: 170 QGVKYTNNEAYFDVIEEIDVIVDKQGSTVFAEIQGYVDVCCKLSGMPDLTMTLINPRL-- 227
Query: 207 STGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRL--NTHVKPLIWI 380
L+DV FH CVR R+EN++ +SF+PPDG F L+SY + V I++
Sbjct: 228 -----------LDDVSFHPCVRYKRWENEKVLSFVPPDGNFRLLSYHIAAQNMVAIPIYV 276
Query: 381 ESVIERHAHS-RVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQ 557
VI ++ +++ + K + +V + I +P + + G + + P
Sbjct: 277 RQVISLKPNAGKLDLTVGPKLSMGK--VLEDVVLEITMPKCVQNCNLVASHGRIAFDPTT 334
Query: 558 NAITWSI 578
+ W+I
Sbjct: 335 KLLQWTI 341
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 48.8 bits (111), Expect = 3e-06
Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Frame = +3
Query: 3 YQCCVVEVRSIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLG 182
++C + Y+++EV + + + + G + + + +L+G P L +G
Sbjct: 1237 FKCKITRTAKPVYKQDEVQIHCYDEYSAFVDKEGILSDQKARVRLFCLAFLTGSPVLEVG 1296
Query: 183 LNDKVLF-ESTGRGKS-------KSVELEDVKFHQCVRLSRFENDRTISFIPPDG-EFEL 335
LND+ + R K + + E ++FH V F+ ++ I+F PPDG FE+
Sbjct: 1297 LNDRRRQGKEIVRRKDILPMYTERWIRFEALEFHSIVNKPEFDKEQVIAFSPPDGCFFEI 1356
Query: 336 MSYRLN--THVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVE 476
M +R+ + + + ++S++ + A S+VE I+A + + + T + E
Sbjct: 1357 MRFRVRPPRNREKAMTVKSIM-KIAGSKVEIRIEAMAAAQIQRTRGSDE 1404
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 459 TANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSI 578
T NNV II+P+P A +P G +Y +N I WS+
Sbjct: 408 TLNNVRIIVPLPT-ATAPSVGECDGEYEYHKTKNVIVWSL 446
>U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical
protein B0244.4 protein.
Length = 309
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 163 IPDKYTLILIAPTISLLSTLPFELANKFTDSITSKKTSFFLYFML 29
I K + +++ IS L+ LA + ITS T +FL+F++
Sbjct: 77 ITKKQYIFMVSRAISALTACVIMLALRILQLITSSFTIYFLFFLI 121
>AF045639-1|AAC02565.1| 672|Caenorhabditis elegans Hypothetical
protein B0212.3 protein.
Length = 672
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 183 LNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHV 362
+ D+V GK K L ++ H ++L + R ++ DG F+L R N H
Sbjct: 191 IEDRVRLMFALGGKIKDGFLRTIETHGTLQLD--DKRRITKYVSNDGNFKLEGIRRNVHK 248
Query: 363 K 365
K
Sbjct: 249 K 249
>AB038044-1|BAB62394.1| 852|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 852
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +3
Query: 354 THVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEII 482
T + L+ ++S+ RH + ++ + K QFK + + N+ ++
Sbjct: 74 TDARILVILDSLFSRHGKTIIQILNSQKLQFKAEAVSKNLPVL 116
>AB037942-1|BAB61757.1| 814|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 814
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +3
Query: 354 THVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEII 482
T + L+ ++S+ RH + ++ + K QFK + + N+ ++
Sbjct: 36 TDARILVILDSLFSRHGKTIIQILNSQKLQFKAEAVSKNLPVL 78
>AB037941-1|BAB61756.1| 826|Caenorhabditis elegans
N-deactylase/N-sulfotransferase protein.
Length = 826
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +3
Query: 354 THVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEII 482
T + L+ ++S+ RH + ++ + K QFK + + N+ ++
Sbjct: 48 TDARILVILDSLFSRHGKTIIQILNSQKLQFKAEAVSKNLPVL 90
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 106 LPFELANKFTDSITSKKTSFFLYF 35
LP E+ N+ +D+ TSK F LYF
Sbjct: 273 LPIEVVNRDSDAGTSKNFDFNLYF 296
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 106 LPFELANKFTDSITSKKTSFFLYF 35
LP E+ N+ +D+ TSK F LYF
Sbjct: 347 LPIEVVNRDSDAGTSKNFDFNLYF 370
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 106 LPFELANKFTDSITSKKTSFFLYF 35
LP E+ N+ +D+ TSK F LYF
Sbjct: 766 LPIEVVNRDSDAGTSKNFDFNLYF 789
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 106 LPFELANKFTDSITSKKTSFFLYF 35
LP E+ N+ +D+ TSK F LYF
Sbjct: 273 LPIEVVNRDSDAGTSKNFDFNLYF 296
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 106 LPFELANKFTDSITSKKTSFFLYF 35
LP E+ N+ +D+ TSK F LYF
Sbjct: 273 LPIEVVNRDSDAGTSKNFDFNLYF 296
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 106 LPFELANKFTDSITSKKTSFFLYF 35
LP E+ N+ +D+ TSK F LYF
Sbjct: 347 LPIEVVNRDSDAGTSKNFDFNLYF 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,898
Number of Sequences: 27780
Number of extensions: 264538
Number of successful extensions: 771
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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