Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3867
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 169 SGIPDKYTLILIAPTISLLSTLPFELANK 83
           SG+      IL A  I+L+S +PF +  K
Sbjct: 153 SGLKRPIRFILAAWLIALISAIPFAIYTK 181


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 12  CVVEVRSIKYRKNEVFLDVIESVNLLANSNGNVLRSEIV 128
           C + + S  +  NE+ L+ +++  +L +   N    EIV
Sbjct: 173 CTIHIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIV 211


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 465 NNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSF 587
           NN+EII+  P     P     I S K   E    T S + +
Sbjct: 344 NNIEIIVKDPETLQFPSGMKIISSKKDRQELWIFTISFQKY 384


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 178 KRNSGIPDKYTLILIAPTISLLSTLPFELANKFTDSITSKK 56
           KRN G  +K  L  +  T+SLL        +  + S T KK
Sbjct: 542 KRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTCKK 582


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 321 GEFELMSYRLNTHVKPLIWIESVIE 395
           G F+  S  L   V+  + +ESVIE
Sbjct: 185 GRFQTTSQNLEDDVEIKVQVESVIE 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,504
Number of Sequences: 438
Number of extensions: 3469
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)