Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3866
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    28   0.64 
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    27   0.85 
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    26   2.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   3.4  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.5  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 200 VRYVHLSPEYDKRIRPKIFFGKYSFFSISKLFFFDENTTLYVRY 69
           +R +HL PE ++ +R    + K SF+     F FD   ++ + Y
Sbjct: 60  LRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSISLNY 103



 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 323 VRYVHLSPEYDKRIRPKIFFGKYSFFSISKLFFFD-ENTI 207
           +R +HL PE ++ +R    + K SF+     F FD EN+I
Sbjct: 60  LRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSI 99


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -2

Query: 332 TLYVRYVHLSPEYDKRIRPKIFFGKYSFFSISKLFFFDENT--ILYVRYVHLSPEYDKRI 159
           T   + +  SP+     +P  F  K+      K +F  E +  I  + Y+   P Y+ R 
Sbjct: 28  TRIAKLLGTSPDTFPGSQPVSFSKKHLQALKEKNYFVCEKSDGIRCLLYMTEHPRYENRP 87

Query: 158 RPKIFFGKYSFFSISKLFFFDEN 90
              +F  K +F+ + K+F+  EN
Sbjct: 88  SVYLFDRKMNFYHVEKIFYPVEN 110


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 251 FFSISKLFFFDENTILYVRYVHLSPEYDKRI 159
           +F +  +F   E+ I Y+  + L P YDKR+
Sbjct: 60  YFLMRIVFIASESYICYLMLMTLRPTYDKRL 90


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 308 LSPEYDKRIRPKIFFGKYSFFSI-SKLFFFDENTILY 201
           L+P+ DKR+R K++F       I   + + D+ T+ Y
Sbjct: 73  LTPKQDKRLRWKLYFTVLVMLMILDMMLYIDKATLSY 109



 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 185 LSPEYDKRIRPKIFFGKYSFFSISKLFFFDENTTL 81
           L+P+ DKR+R K++F       I  +  + +  TL
Sbjct: 73  LTPKQDKRLRWKLYFTVLVMLMILDMMLYIDKATL 107


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 251 FFSISKLFFFDENTILYVRYVHLSPEYDKRIRPKIFF-GKYSFFSISKLFF 102
           F+ ++ +FFF E T      V    E D   RPK+ +  K+  F ++++ F
Sbjct: 272 FYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFLLFFLAEVAF 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,684
Number of Sequences: 5004
Number of extensions: 25461
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)