Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3866
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101314-2|AAM48557.1|  463|Caenorhabditis elegans Hypothetical ...    33   0.079
AF101314-1|AAQ91895.1|  468|Caenorhabditis elegans Hypothetical ...    33   0.079
Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical ...    27   6.9  

>AF101314-2|AAM48557.1|  463|Caenorhabditis elegans Hypothetical
           protein Y39D8A.1a protein.
          Length = 463

 Score = 33.1 bits (72), Expect = 0.079
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = -2

Query: 332 TLYVRYVHLSPEYDKRIRP----KIFFG-KYSFFSISKLFF-FDENTILYVRYVHLSPEY 171
           T+Y   +H+S  YD  IRP     +FFG  Y    I  LF    +  +  VR V  +   
Sbjct: 325 TMYCAMIHMSTPYDAPIRPTSKEPLFFGHSYLLALIIGLFCGIGDCCVNSVRSVICALLM 384

Query: 170 DKRIRPKIFFGK--YSFFSISKLFFFDENTTLYV 75
            KR RP+ F     Y  F  + LFF    T LYV
Sbjct: 385 PKR-RPQAFSVSKIYHAFGSTILFFMSPITPLYV 417


>AF101314-1|AAQ91895.1|  468|Caenorhabditis elegans Hypothetical
           protein Y39D8A.1d protein.
          Length = 468

 Score = 33.1 bits (72), Expect = 0.079
 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
 Frame = -2

Query: 332 TLYVRYVHLSPEYDKRIRP----KIFFG-KYSFFSISKLFF-FDENTILYVRYVHLSPEY 171
           T+Y   +H+S  YD  IRP     +FFG  Y    I  LF    +  +  VR V  +   
Sbjct: 330 TMYCAMIHMSTPYDAPIRPTSKEPLFFGHSYLLALIIGLFCGIGDCCVNSVRSVICALLM 389

Query: 170 DKRIRPKIFFGK--YSFFSISKLFFFDENTTLYV 75
            KR RP+ F     Y  F  + LFF    T LYV
Sbjct: 390 PKR-RPQAFSVSKIYHAFGSTILFFMSPITPLYV 422


>Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical
           protein ZC374.2 protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 341 ENTTLYVRYVHLSPEYDKRIRPKIFFGKYSFFSISKLFFF 222
           +NTT+ ++++     Y  +I P+++ G Y F S  +LF F
Sbjct: 553 KNTTVLLKHLTEGVRYSVQIIPRLYTGDYDFES-RELFEF 591


>AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical
           protein C17A2.3 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 317 YVHLSPEYDKRIRPKIFFGKYSFFSISKLF--FFDENTILYVRYVHLSPEYDKRIRP 153
           Y +L   YD   R  IF   YS+ SISK F  +   +   +V   HL  EY   + P
Sbjct: 150 YRNLRDTYDDLFRKSIFSLYYSYTSISKHFDWYLKTDDDTFVAMDHLR-EYLNTLNP 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,872,204
Number of Sequences: 27780
Number of extensions: 134402
Number of successful extensions: 264
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)