Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3866
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 334 VFSSXXXXXXTRGGARYPIRP 396
           VFS        R  +RYP+RP
Sbjct: 107 VFSRQDIETIIRRNSRYPLRP 127


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 344 DENTTLYVRYVHLSPEYDKRIRP 276
           D  TTL     +L  EYD  +RP
Sbjct: 39  DHPTTLLKLKRYLFCEYDPNVRP 61


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 59  SPEYDKRIRPKIQ 21
           S  YDKR+ P +Q
Sbjct: 71  STRYDKRLLPPVQ 83


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 59  SPEYDKRIRPKIQ 21
           S  YDKR+ P +Q
Sbjct: 71  STRYDKRLLPPVQ 83


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 59  SPEYDKRIRPKIQ 21
           S  YDKR+ P +Q
Sbjct: 71  STRYDKRLLPPVQ 83


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 59  SPEYDKRIRPKIQ 21
           S  YDKR+ P +Q
Sbjct: 71  STRYDKRLLPPVQ 83


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 305 SPEYDKRIRP 276
           S  YDKR+RP
Sbjct: 20  SVSYDKRVRP 29



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 182 SPEYDKRIRP 153
           S  YDKR+RP
Sbjct: 20  SVSYDKRVRP 29



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 59 SPEYDKRIRP 30
          S  YDKR+RP
Sbjct: 20 SVSYDKRVRP 29


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 305 SPEYDKRIRP 276
           S  YDKR+RP
Sbjct: 20  SVSYDKRVRP 29



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 182 SPEYDKRIRP 153
           S  YDKR+RP
Sbjct: 20  SVSYDKRVRP 29



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 59 SPEYDKRIRP 30
          S  YDKR+RP
Sbjct: 20 SVSYDKRVRP 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,497
Number of Sequences: 438
Number of extensions: 1640
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)