Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3865
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.8  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    26   3.2  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   3.2  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   3.2  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   5.5  

>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 181 ATELFYPVPINVKISKVLYVFFGKPT 258
           A  LFYP+ +N  IS ++ +FF  PT
Sbjct: 61  ALPLFYPLLLNFLISLMVRMFFNLPT 86


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 397 SAVAIPNSSVPNVCRNIELGN*ELFNSISPIIFAQNES 510
           SAV  P  SV  VC ++EL   + F S  P+   Q ++
Sbjct: 802 SAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEKA 839


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 14  GDYFKALPTKRLSGPTSDLHP 76
           GD F+A+P++R++  T DLHP
Sbjct: 229 GDIFQAVPSQRIARRT-DLHP 248


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +2

Query: 251 NPQKGPLP--LSY--TIDNNFEHSRK*TRVFKKCRRNVFFLRKIPKN-SIVIIGAPLPFQ 415
           NPQ  P+P  L Y  T++  F       R+ +K   +   +  +P   S     APL  +
Sbjct: 167 NPQPSPMPTLLPYERTVNGLFIDDTTRERIERKSEASRQTISALPSIISSYTSLAPLNTK 226

Query: 416 THQFQTFVGTSSWVIKNFSTQSAP*YLHK 502
            ++++  +G SSW  K  S+     Y+ K
Sbjct: 227 LYRYKEQIGFSSWTYKCTSSIDGNAYVLK 255


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 252 FSEENVKYFRYLHINWYRV 196
           +SEE++ YF   HIN+Y +
Sbjct: 100 YSEEDLHYFTKHHINYYHI 118


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 29  ALPTKRLSGPTSDLHPGIRIRVKYHNPAFSYLKDFQVFLKVNS 157
           A+   RL+   S LHP ++  +K  +  FS   DF    K+N+
Sbjct: 134 AINNSRLADLKSKLHPYLKKGLKISHDNFSDSNDFSFQKKLNT 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,696
Number of Sequences: 5004
Number of extensions: 44536
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)