Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3865
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0117 - 6963648-6963784,6963922-6963989,6964379-6964456,696...    28   5.6  
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680...    28   5.6  
06_03_0482 + 21307314-21307458,21308747-21308850,21308924-213090...    27   9.8  
05_01_0130 + 878323-878640,879017-879181                               27   9.8  

>02_02_0117 -
           6963648-6963784,6963922-6963989,6964379-6964456,
           6964556-6964647,6964735-6964803,6965360-6965483,
           6965640-6965763,6966568-6966686,6966965-6967056,
           6967251-6967454,6967823-6967942,6968687-6968782,
           6968862-6968965,6970714-6970861
          Length = 524

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 71  HPGIRIRVKY--HNPAFSYLKDFQVFLKVN 154
           HP  R + ++  H P F YLK  ++  K+N
Sbjct: 101 HPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 130


>01_05_0600 +
           23566223-23566355,23567752-23567855,23567958-23568053,
           23568134-23568253,23568543-23568710,23568921-23569012,
           23569739-23569857,23570547-23570670,23570801-23570924,
           23571291-23571359,23571470-23571561,23571645-23571722,
           23571927-23571994,23572073-23572209
          Length = 507

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 71  HPGIRIRVKY--HNPAFSYLKDFQVFLKVN 154
           HP  R + ++  H P F YLK  ++  K+N
Sbjct: 96  HPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 125


>06_03_0482 +
           21307314-21307458,21308747-21308850,21308924-21309019,
           21309264-21309383,21310049-21310246,21310392-21310483,
           21310848-21310966,21311722-21311845,21312016-21312139,
           21312998-21313066,21313146-21313237,21313330-21313407,
           21313677-21313744,21313842-21313978
          Length = 521

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 71  HPGIRIRVKY--HNPAFSYLKDFQVFLKVN 154
           HP  R + ++  H P F YLK  ++  K+N
Sbjct: 100 HPEFRYKSEFQSHEPEFDYLKSLEIEEKIN 129


>05_01_0130 + 878323-878640,879017-879181
          Length = 160

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
 Frame = -2

Query: 463 LNYPARCSYKRLELMSLEWQ-------RRSDDDD 383
           +++PA+   + L LM  EWQ       RRSDDDD
Sbjct: 97  VSFPAKPRGEALTLMEREWQEKELLLPRRSDDDD 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,199,022
Number of Sequences: 37544
Number of extensions: 238890
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)