Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3865
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    31   0.54 
U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effec...    29   2.9  
U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effec...    29   2.9  

>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 284 TIDNNFEHSRK*TRVFKKCRRNVFFLRKIPKNSIVI 391
           T+ NNF+H +     FKK ++++ FL KI K   VI
Sbjct: 559 TVVNNFKHLKAFVEKFKKFKKDLEFLNKIKKIEPVI 594


>U00048-13|AAB53830.1|  484|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform a protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 68  LHPGIRIRVKYHNPAFSYLKDFQVFLKVN 154
           +H G++I  KY+  A   LKDF+ F + N
Sbjct: 427 IHEGVQIAKKYNAEAGKTLKDFKSFTETN 455


>U00048-12|AAL27228.1|  507|Caenorhabditis elegans Maternal effect
           lethal protein32, isoform b protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 68  LHPGIRIRVKYHNPAFSYLKDFQVFLKVN 154
           +H G++I  KY+  A   LKDF+ F + N
Sbjct: 450 IHEGVQIAKKYNAEAGKTLKDFKSFTETN 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,064,995
Number of Sequences: 27780
Number of extensions: 239559
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)