Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3864
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    28   1.1  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       25   7.9  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 394 ISCVIHSCSDFLVVVSVKLIYLLHFIYSDTSAFDLWVFSPHISYRSTEVDAKFIR*SIYF 573
           IS  +HS   FL+++   L + +H + +  +    W  S ++S+R   V   F+  S+  
Sbjct: 709 ISPSLHSILRFLLLLLAFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFLIFSVPI 768

Query: 574 KGFSN 588
             + N
Sbjct: 769 YDWGN 773


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 113 IESENLSEIYEQSAGTMFWVLNLFK 39
           +++EN SEI ++    M W LN+ K
Sbjct: 138 LDNENFSEIQKKWLPNMSWPLNIIK 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,565
Number of Sequences: 5004
Number of extensions: 56195
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)