Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3864
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.70 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -3

Query: 642 CIRPRFLLERQLLKWKRSVRETFKIDRLPDKL 547
           CI+ R  + R+LL+W +++     ++R+ ++L
Sbjct: 9   CIQERRHIRRELLRWTKNMVFVVGLERVAEEL 40


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 573 KIDRLPDKLCINFS*PV*DVW 511
           K+D L DK   N S PV ++W
Sbjct: 39  KLDNLMDKQFKNKSLPVIEIW 59


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 360 IEWRF*TVNNSHSTL 316
           ++W++ T N SH+ L
Sbjct: 122 LDWKYYTTNESHACL 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,240
Number of Sequences: 438
Number of extensions: 4080
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)