Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3863
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0648 - 4917123-4917651,4917728-4917857,4917958-4918093           32   0.46 
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091...    31   0.80 
05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728     27   9.8  
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731     27   9.8  

>01_01_0648 - 4917123-4917651,4917728-4917857,4917958-4918093
          Length = 264

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 420 APPQIATTVTVPGSRIILRNVLVVRFIISTVFSCDSF 310
           APP +A T T P S ++L   L V  + +  ++CD F
Sbjct: 131 APPPLAATHTSPSSSLLLLPPLAVPTVKTEAYTCDDF 167


>04_03_1011 -
           21708503-21708544,21708689-21708898,21709000-21709112,
           21709232-21709349,21709386-21709412,21709671-21709808,
           21710069-21710194,21710279-21710467,21710598-21710885,
           21710937-21711024,21711120-21711298
          Length = 505

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 518 HDLPYHYTVDKYPTIFVFSADSNRVEAESA 607
           +D+P  +TV+ YPTI+ +S+  N +  + A
Sbjct: 427 NDIPTDFTVEGYPTIYFYSSSGNLLSYDGA 456


>05_05_0160 + 22829401-22830658,22831671-22831703,22832586-22832728
          Length = 477

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 438 LVTAPHAPPQIATTVT--VPGSRIILRNVLVVRFIISTVFSCDSFSFEAFDSK*CVCAAS 265
           LV     PP+  TT T  +     + + V+ +RFI+S     D  S     S+  +CAA+
Sbjct: 39  LVHTEQEPPEPITTATFCLASPPRVSQLVVPIRFIVSLAVPVDDGSKGEVISRGTICAAN 98

Query: 264 S 262
           S
Sbjct: 99  S 99


>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
          Length = 369

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 343 KSHHQNVPEDYPGTGNCNGGGDLRRRVRCG 432
           K    ++P  Y   G+C GGG  R+R+  G
Sbjct: 5   KRKRSSLPPQYATAGDCCGGGGRRKRLAGG 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,202,949
Number of Sequences: 37544
Number of extensions: 253711
Number of successful extensions: 694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)