Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3863
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-3|AAK68396.1|  345|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>U88169-3|AAK68396.1|  345|Caenorhabditis elegans Hypothetical
           protein T03F1.6b protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
 Frame = +2

Query: 32  NNFSLYILAVDSIRNHHFAESLGVNITNKKDMTSAVILDSKHESQYVLSEDYNAKSIRDF 211
           N+  +YI+  D + NHH   ++ + I +K D   A  L   +++    S     +S+   
Sbjct: 205 NHSFMYIMFHDYL-NHHTISNVTLEIASKYDANLA--LQKAYQAALPHSRRRFLESLTIE 261

Query: 212 IAN----FTHKRLKRSLRTHVDDAAHT 280
             N     T + +KR L  HVD+  HT
Sbjct: 262 FGNSLKAVTEEEMKRVLLCHVDEFHHT 288


>U88169-2|AAB42234.1|  342|Caenorhabditis elegans Hypothetical
           protein T03F1.6a protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
 Frame = +2

Query: 32  NNFSLYILAVDSIRNHHFAESLGVNITNKKDMTSAVILDSKHESQYVLSEDYNAKSIRDF 211
           N+  +YI+  D + NHH   ++ + I +K D   A  L   +++    S     +S+   
Sbjct: 205 NHSFMYIMFHDYL-NHHTISNVTLEIASKYDANLA--LQKAYQAALPHSRRRFLESLTIE 261

Query: 212 IAN----FTHKRLKRSLRTHVDDAAHT 280
             N     T + +KR L  HVD+  HT
Sbjct: 262 FGNSLKAVTEEEMKRVLLCHVDEFHHT 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,188
Number of Sequences: 27780
Number of extensions: 215167
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)