Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3862
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0194 + 13645418-13645790,13645879-13647653                       29   2.4  
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891...    29   4.2  
11_05_0095 + 19009866-19010159,19010255-19010448,19012183-19012582     28   5.5  
04_04_0819 - 28312667-28313219,28315157-28316430                       28   5.5  

>01_03_0194 + 13645418-13645790,13645879-13647653
          Length = 715

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 500 DKYKCLFQGYGCILNICMCIIKILHLFPLSGTCNKSPLRT*H 375
           DKY  LF G  C+ N   C++    L P+ G    S L   H
Sbjct: 79  DKYYNLFHGLECVDNRAFCLLLWAALLPMVGMNTSSILTAVH 120


>03_04_0214 +
           18688480-18688832,18688956-18688999,18689039-18689101,
           18689883-18689956,18691526-18692017
          Length = 341

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 512 FPWRDSNPRPPCVVTMSLTTTPDDRCFRVISFFL*KYNTINNI 640
           +PW    P  P + T  ++T P      +IS    +YN++  I
Sbjct: 195 YPWLGDRPLVPTIKTFQISTNPTTEGLGIISEVPIRYNSVEVI 237


>11_05_0095 + 19009866-19010159,19010255-19010448,19012183-19012582
          Length = 295

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 184 VANWSGDHSHY*GWGSKFQLYFD 252
           V  W+ DH HY   G + QLY D
Sbjct: 39  VPTWAEDHIHYVDGGREVQLYLD 61


>04_04_0819 - 28312667-28313219,28315157-28316430
          Length = 608

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 542 GVAGSNPAKGRYLYDKYKCLFQGYGCILNICMCIIKILHLFPLSGTCNKSPLRT 381
           G A   PA GR++ D    L Q   C+  +      + HL+P+  +   SPL T
Sbjct: 107 GAAVCGPA-GRHVVDAMLVLSQASFCVGYLIFISNTMAHLYPVGDSSPSSPLLT 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,751,483
Number of Sequences: 37544
Number of extensions: 309452
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)