Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3862
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.8  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 158 VETD*FTVLSLIGAETIVTIEVGDQSF 238
           VE   FTV   +G   ++T++ GD  F
Sbjct: 149 VELIMFTVNKYVGEHLLMTVDAGDSMF 175


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +3

Query: 57  MNGSLPWFRRTFCF--RFLVTW 116
           +N    WF+ TFC+  R   TW
Sbjct: 527 LNEIYNWFQNTFCYFRRNAATW 548


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 59  EWKSAVVPKNVLFSFLGYLVSLLFCVKYSKC 151
           ++ SAV+  NV+ S  G +V L   +  S C
Sbjct: 101 QYSSAVINTNVIVSHTGEVVWLSHGIFRSSC 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,755
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)