Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3860
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    29   0.84 
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    28   1.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   7.9  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.9  

>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 527 LHINAYVIEPIRKAFCHISLKQSSTLYNISLLISY 423
           + +N Y +  + KAF H  ++   T+ N++ L+SY
Sbjct: 105 MDVNFYGVIRMNKAFQHQLIRAKGTIVNVNSLVSY 139


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 291 TDPNKSSASQNLPPDPNHDKVRRFDEDGDR 380
           T    SS++ NLPP+P   +V+ F + G R
Sbjct: 221 TSQTSSSSTLNLPPEPASREVKIFPKQGKR 250


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 409 IGRIRYEMRSDILYKVLDCFKEI*QKAFLIGS 504
           +  IRYE+   I  KV  C K   +KA  IGS
Sbjct: 91  VENIRYEVNEVIDKKVAPCIKAFNEKARKIGS 122


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 297 PNKSSASQNLPPDPNHDKVRRFDEDGDRCLRL 392
           P  S+ + NLPPDP    V+   +  DR L +
Sbjct: 9   PVSSTFTSNLPPDPLVPTVQAMKKADDRILHV 40


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 614  KWMTRTGKADPTTTWIYGKRERERERENPLHINAYVIEPIRK 489
            K +  TG+  P++  I G      E EN LH++ YV+E  +K
Sbjct: 1239 KLLLTTGEIYPSSHKI-GSSVETFEIENLLHLSNYVVEMTKK 1279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,299
Number of Sequences: 5004
Number of extensions: 52206
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)