Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3860
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0202 - 21184217-21184503,21184622-21184982                       31   1.1  
07_03_0837 + 21870106-21870509,21870601-21870778                       28   6.1  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   8.1  
03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202...    28   8.1  

>11_06_0202 - 21184217-21184503,21184622-21184982
          Length = 215

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 289 LATSPGLSPVSSPTCSVTLIQPLKDARPPCIDNPQCL 179
           LA SP  +P  SPT + +L Q  K + PP   +P  L
Sbjct: 143 LAESPAATPAQSPTAAPSLPQAPKPSSPPPFTSPSPL 179


>07_03_0837 + 21870106-21870509,21870601-21870778
          Length = 193

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 204 GGRASLRGCISVTEQVGELTGLKPGEVANTDPNKSSASQNLPPDPNH-DKVRRFD 365
           GG  +  G      Q G + GL  GE+ +   ++ S S   P  PNH D+V   +
Sbjct: 130 GGSLTRDGLPPQDGQTGRVDGLVWGELIHFSLSRKSQSHPFPLQPNHVDRVEALE 184


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 258 LTGLKPGEVANTDPNKSSASQNLPPDPNHDKVRRFDEDGDRCL 386
           LT   PG  +++  + SS+S + P +P+  +    D+D D  L
Sbjct: 25  LTLRLPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPDNRL 67


>03_06_0026 -
           31118997-31119113,31119700-31119900,31120032-31120218,
           31120339-31120415,31120738-31120815,31120858-31120974,
           31121047-31121175,31121327-31121479,31121589-31122044,
           31122122-31122239,31122385-31122575,31123140-31123415,
           31123524-31123700,31124040-31124141,31124227-31124459,
           31125563-31125764
          Length = 937

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +3

Query: 231 ISVTEQVGE----LTGLKPGEVANTDPNKSSASQNLPPDPNHDKVRRFDEDG 374
           + + E+VGE    L G +  E+A     K  A     PDP  ++V+RF   G
Sbjct: 800 VEIREEVGEENFFLFGAEAHEIAGL--RKERAQGKFVPDPRFEEVKRFVRSG 849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,797,364
Number of Sequences: 37544
Number of extensions: 359125
Number of successful extensions: 1042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)