Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3859
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.8  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 178 KAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTP 59
           K +C   G  AL+ER+ +   + F+    S+   K+ G P
Sbjct: 27  KKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSGRP 66


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 591 NIWEMVLSWFVNCFALLRNMHLQSFSLMK 505
           N+ +MVL W      L   +HL  + L++
Sbjct: 166 NVLDMVLYWDQEPIILADELHLTEYKLVE 194


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 346 PGLKFLYGLWP*SPSHLLLNQNHQVDSIIPTWS 444
           P L  L+G W   P+ L  ++   + S+  +W+
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVNKSWN 697


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 346 PGLKFLYGLWP*SPSHLLLNQNHQVDSIIPTWS 444
           P L  L+G W   P+ L  ++   + S+  +W+
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVNKSWN 697


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 346 PGLKFLYGLWP*SPSHLLLNQNHQVDSIIPTWS 444
           P L  L+G W   P+ L  ++   + S+  +W+
Sbjct: 665 PDLLHLFGSWSNRPNLLFKDEAKDLVSVNKSWN 697


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,431
Number of Sequences: 438
Number of extensions: 4785
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)