Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3855
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    27   0.90 
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   3.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   4.8  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   6.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   6.3  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   6.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    24   8.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   8.4  

>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 153 KNLAATNNTGSDIKPLFFFNRI 88
           KNL +T NTG +  P+++ N +
Sbjct: 34  KNLISTQNTGEESNPIYYTNSV 55


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -2

Query: 187 ESIDTTAL--PLTEELSRYK*HWKRH 116
           + +D  AL  P T  L   K HWKRH
Sbjct: 487 QEVDVEALFTPATSSLKLPKSHWKRH 512


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 156 VKGSAVVSIDSYLNTYQEKLSAKTVCSNPLWIY*LQIVDFHSINSPFSN 302
           V G+  +  +  L TY+  L  ++V SN  W Y + I + H + +  S+
Sbjct: 472 VDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQY-MAIDEAHRLKNSESS 519


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -3

Query: 216 IIFLDMCSNKNRLILRRYP*PKNLAATNNTGSDIKPLFFFNRILCENNELKYWIRQ 49
           I+FL  C   +R   R       +A   N    ++PL F+  +  E+ E + W++Q
Sbjct: 395 ILFLKHCRKSDR---RSQQPELYMAIDANAPLILRPLIFYYNLNQESLEFQRWLKQ 447


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 406 LTRGPTTSNMLSKIPEDINFEIPKRTMSLLMTSEG 302
           L+  PT S  L ++ +++NF IP+   +L++ S G
Sbjct: 584 LSWSPTPSTALFQL-KNLNFTIPRNQFTLVVGSTG 617


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 406 LTRGPTTSNMLSKIPEDINFEIPKR 332
           LT+G T +N  SK+ E  N  +P +
Sbjct: 486 LTKGMTANNAFSKVEEFANNSMPSK 510


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 373 SKIPEDINFEIPKRTMSLLMTSEGFENGEFI 281
           ++IPE+I+F+     M L    +G+ +GE I
Sbjct: 879 AQIPEEISFQKGDTLMVLRTQEDGWWDGEII 909


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 144 LSSSVKGSAVVSIDSYLNTYQEKLSAKTVC 233
           L SSV   A     +YL + +EK   KT C
Sbjct: 709 LESSVMACAFCKTFAYLASIEEKNGTKTAC 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,463
Number of Sequences: 5004
Number of extensions: 32561
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)