Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3855
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-9|CAJ43453.1|  371|Caenorhabditis elegans Hypothetical pr...    30   0.77 
U40945-3|AAA81721.2|  146|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical p...    27   5.5  
U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U39645-7|AAA80364.1|  190|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL021481-6|CAD36498.1|  108|Caenorhabditis elegans Hypothetical ...    27   7.2  
AC024859-12|AAK29966.1|  477|Caenorhabditis elegans Hypothetical...    26   9.5  

>Z83109-9|CAJ43453.1|  371|Caenorhabditis elegans Hypothetical
           protein F44G3.14 protein.
          Length = 371

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
 Frame = -3

Query: 249 SIVDLNIRSWLIIFLDMCSNKNRLILRRYP*P-KNLAATNNTGSDIKPLFF---FNRILC 82
           SI+DL     L   +D   NKNRLI+R+     + +  T+N G      F    +  +L 
Sbjct: 72  SILDLP-EKLLHKIVDKLKNKNRLIVRKVSRKMREVIDTHNPGFKTLGFFVKKNYTSLLV 130

Query: 81  ENNELKYWI--RQCSFNKNTKDKYRAGSK 1
           +N E+KY    R C      K K   G+K
Sbjct: 131 DNMEIKYSSVGRDCVLKYGQKTKTIIGAK 159


>U40945-3|AAA81721.2|  146|Caenorhabditis elegans Hypothetical
           protein F10D7.3 protein.
          Length = 146

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 92  LLKKKSGLMSLPVLFVAAKFFG 157
           +LKK SG  ++P LF++ KF G
Sbjct: 89  ILKKYSGRTTVPQLFISGKFVG 110


>U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical
           protein C45G9.10b protein.
          Length = 805

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 394 PTTSNMLSKIPEDINFEIPKRTMSLLMTSEGFENG 290
           P   + L+K  E++NF+     ++++ + E FENG
Sbjct: 652 PNLIDFLNKERENVNFKYDSTELAMICSYEIFENG 686


>U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical
           protein C45G9.10a protein.
          Length = 971

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 394 PTTSNMLSKIPEDINFEIPKRTMSLLMTSEGFENG 290
           P   + L+K  E++NF+     ++++ + E FENG
Sbjct: 818 PNLIDFLNKERENVNFKYDSTELAMICSYEIFENG 852


>U39645-7|AAA80364.1|  190|Caenorhabditis elegans Hypothetical
           protein C14F11.6 protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 418 YPCGLTRGPTTSNMLSKIPEDINFEIPKRTMSLLMTSE 305
           Y C     P T   ++   EDIN + P R  ++++ SE
Sbjct: 142 YKCSAVYDPKTEFGINPFDEDINVDWPIRDKTVVIVSE 179


>AL021481-6|CAD36498.1|  108|Caenorhabditis elegans Hypothetical
           protein Y43F4B.10 protein.
          Length = 108

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -3

Query: 126 GSDIKPLFFFNRILCEN-----NELKYWIRQCSFNKNTKDKYRA 10
           G D++P + FN++ CE         K  IR C     T DK +A
Sbjct: 37  GKDVRPTYTFNKLTCERLKRNIQAAKVLIRACQQEAET-DKKKA 79


>AC024859-12|AAK29966.1|  477|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.16 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 96  NRILCENNELKYWIRQCSFNKNTKDKYRAG 7
           N +L    ELK   R   FN + K K R G
Sbjct: 196 NHVLANVTELKRQYRSIQFNSDEKSKMRTG 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,972,806
Number of Sequences: 27780
Number of extensions: 169639
Number of successful extensions: 387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)