Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3855
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   1.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   2.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   2.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   2.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.5  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 96  NRILCENNELKYWIRQCSFNKNTKDKY 16
           NR +  NN  KY     ++N N K  Y
Sbjct: 87  NRTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 96  NRILCENNELKYWIRQCSFNKNTKDKY 16
           N+ +  NN  KY     ++N N K  Y
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 96  NRILCENNELKYWIRQCSFNKNTKDKY 16
           N+ +  NN  KY     ++N N K  Y
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 96  NRILCENNELKYWIRQCSFNKNTKDKY 16
           N+ +  NN  KY     ++N N K  Y
Sbjct: 87  NKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 171 VVSIDSYLNTYQEKLSAKT 227
           ++++ +YLNTY+     +T
Sbjct: 203 IINVPAYLNTYKGDFPTET 221


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 341 YLEVYILRDLAEHITGGR 394
           YL+  +LR+L  H+  GR
Sbjct: 800 YLDGNVLRELQNHVFIGR 817


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 147 SSSVKGSAVVSIDSYLNTYQEKLSAKTVCSNPLWIY*LQIVDFHSINSPFSNPSLV-INN 323
           +SS+     +SID Y+   Q    AK   +  +W   L I+   +I++   +P ++ +NN
Sbjct: 271 TSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVW---LTILLVWAISAAIGSPIVLGLNN 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,156
Number of Sequences: 438
Number of extensions: 2205
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)