Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3849
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   5.9  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.8  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 205 FGPAWAIRPSLIFTIDLLAIIRF 137
           FGP++A+  SLI  ID L ++ F
Sbjct: 565 FGPSFALYNSLIMLIDKLEVLGF 587


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
 Frame = +2

Query: 353 PFYSSGTAVVRG--NCPMIHNYHYYWEIKMLTDTYG--TDILIGVGSNKVNISDPQFTFT 520
           PF SS      G  NCPM    ++         ++   T +    GSN  +   P F + 
Sbjct: 334 PFPSSKNRPRPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFS---PDFPYG 390

Query: 521 SLIGQDEESYGLSYTGAVRHNSKVTRDS 604
           +  G     +  +Y G+V H+++ T  S
Sbjct: 391 NSYGNGSSHFIANYGGSVHHSNENTMQS 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,856
Number of Sequences: 5004
Number of extensions: 58471
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)