Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3848
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    28   1.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.5  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    26   5.9  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 523 HQNPLRSFKDLSIHKDIGTEKSTLFY 600
           H NP+ + K    H     +KSTLFY
Sbjct: 757 HPNPMTTLKRKGQHNSFSYDKSTLFY 782


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 241 SSFHSDYKKHIDIVFFLFTQVTYYLFKVTIVILDTF 348
           S   S+    I+IVF  + Q+ +YL  +  VIL  +
Sbjct: 445 SKLSSEDLSSIEIVFIWYAQILWYLVFIVSVILSIY 480


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 306 LLSVQSYNCNPRY-VFIF*YLQ*QFMINVLLCY*RPALA 419
           L++ Q+Y C+P Y +F     Q  +M  V+LCY   +LA
Sbjct: 301 LMATQNYVCSPEYHMFAHPVTQNHYM--VMLCYKNGSLA 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,446
Number of Sequences: 5004
Number of extensions: 59242
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)