Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3848
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 133 RQRYRSSLNNFFLTNLA 183
           R+RY  +  N+F+T+LA
Sbjct: 72  RERYLHTATNYFVTSLA 88


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 75  HVKRFRHDTRGIVGEHTSALLAAV 4
           H+ R  HD    VG H    L  V
Sbjct: 509 HLPRIHHDAEWKVGNHEDGYLIGV 532


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 75  HVKRFRHDTRGIVGEHTSALLAAV 4
           H+ R  HD    VG H    L  V
Sbjct: 424 HLPRIHHDAEWKVGNHEDGYLIGV 447


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 75  HVKRFRHDTRGIVGEHTSALLAAV 4
           H+ R  HD    VG H    L  V
Sbjct: 743 HLPRIHHDAEWKVGNHEDGYLIGV 766


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 476 IHINLPLQSLYLLKKRIK 529
           IH NLP  SLY   KR K
Sbjct: 596 IHYNLPYSSLYGRFKRGK 613


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 188 NLARLVRKKLFNELR*RCRKKNVLP 114
           NLA  V  ++F E    C+ KN+ P
Sbjct: 153 NLASEVANEMFCETTIGCKDKNMAP 177


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 256 HYGMNSDFRPSISSH 212
           H G N++FR  +S+H
Sbjct: 343 HLGGNAEFRCEVSTH 357


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 256 HYGMNSDFRPSISSH 212
           H G N++FR  +S+H
Sbjct: 343 HLGGNAEFRCEVSTH 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,543
Number of Sequences: 438
Number of extensions: 4634
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)