Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3844
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   1.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   2.9  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    26   3.8  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   5.0  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    26   5.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   6.6  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   6.6  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   8.8  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    25   8.8  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +1

Query: 70  GEPGKPSTEPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKMNPAEKEELQRSLEEGIV 249
           GEP KP   PLP + EA    +  +L    +N +  H   V  +P+   E+Q ++E  + 
Sbjct: 77  GEPLKPYQTPLPPELEAPLQLLISKLTQHYINGWYKH---VSEDPSFIREVQSTIEYIMR 133

Query: 250 YFFFY 264
            F+ Y
Sbjct: 134 QFYAY 138


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 275 GGRAHSPPGVKWLLEPIDIYN 337
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 11  LWKMLERRGASILSMVSLSRVNPGSHQRSLSPPTLRPETQ 130
           +W+ML  +GAS+L  V    V   +HQR ++   L P+ +
Sbjct: 193 VWRMLNHQGASLLQPV----VKFQAHQRYITRCVLSPDVK 228


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 160 VNLFETHSIEVKMNPAEKEELQRSLEEGIVYFFFYCLAGWTSSQST 297
           +++F TH  +  +N A     + SLE G+V  + Y +  W +   T
Sbjct: 34  ISIFPTHYDQPYLNEAPSW-YKYSLESGLVCLYLYLIYRWITRSFT 78


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 283 SSTQLSNKKKSKQYLLQVTSEVLPSQQDSF*PRWSEF 173
           SS+Q+ N+K S++ LLQ       S+     P+W  F
Sbjct: 47  SSSQIKNEKFSQEVLLQFNDPSFTSEVGES-PQWQSF 82


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 189 LDGVSFEEVDHSVQESVVDLCVSG-LRVGGERLR*WLP 79
           LDGV F   + SV+E V+  C S  +   G R + +LP
Sbjct: 777 LDGVLFAFQEQSVEEKVILTCFSTVVNALGTRCKPYLP 814


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 169 FETHSIEVKMNPAEKEELQRSLEE 240
           + + +IE+K+   EKEE  R+LEE
Sbjct: 97  YASKNIELKLQKKEKEEELRNLEE 120


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 94  EPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKM 198
           +PLP   E++ A V+Y  L   +  FE HS  V M
Sbjct: 10  KPLPKLDESKQAWVSYLWLKKALPGFEEHSAYVYM 44


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 337 RKCASHLEI*VVRSQYSYNGCPAF 408
           RKC   L+  VVR  Y+Y G P+F
Sbjct: 244 RKCKGSLD--VVRFIYNYGGIPSF 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,722
Number of Sequences: 5004
Number of extensions: 44806
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)