Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3844
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600           29   3.9  
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256...    28   6.8  
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47...    28   6.8  
03_03_0041 - 14007687-14009381                                         28   6.8  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    27   9.0  

>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
          Length = 251

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 374 LTTYISRWEAHLRCKC 327
           LTT +  WEAH RC+C
Sbjct: 121 LTTALPPWEAHPRCRC 136


>07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,
            2565044-2565115,2565196-2565261,2565355-2565417,
            2565505-2565570,2565963-2566062,2567403-2567504,
            2567772-2567995,2568200-2568314,2568653-2568763,
            2568873-2569088,2569426-2569624,2570690-2570790,
            2570872-2570919,2571052-2571236,2571345-2571462,
            2571572-2571699,2571981-2572107,2572529-2572647,
            2572770-2572938,2573078-2573162,2573247-2573320,
            2573449-2573568,2574068-2574251,2574343-2574464,
            2574548-2574755,2574885-2574958,2575047-2575185,
            2575275-2575456,2575852-2576007,2576153-2576284,
            2576508-2576566,2576913-2576945,2577065-2577196,
            2577303-2577479
          Length = 1675

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 64   IKGEPGKPSTEPLPADPEARDAEVNYRLLDGVV 162
            ++G+P   STEP+  +PE    EV  +L DG V
Sbjct: 1528 VEGQPISASTEPIAVEPEIY-KEVKQKLDDGSV 1559


>06_01_0056 -
           478424-478491,478587-478821,478916-478978,479102-479179,
           479263-479354,479788-479866,479971-480104,480184-480523
          Length = 362

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 100 LPADPEARDAEVNYRLLDGVVNLFETHSIEVKMNPAEKEELQRSLEEGIV 249
           LP  P  R A     LL   V+   T +  V   PA+KE++ +  +EG+V
Sbjct: 29  LPCPPRTRAAHQRGLLLRAQVST--TDAAAVAAAPAKKEKISKKHDEGVV 76


>03_03_0041 - 14007687-14009381
          Length = 564

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 160 PLRPGVCS*PLRLWPQGRRGEAPLMASR--VHP 68
           PL PGV    ++LWP      A ++ASR  +HP
Sbjct: 115 PLLPGVDGFLIQLWPPDAADAAEVLASRLGIHP 147


>06_01_0893 -
           6834350-6834464,6835042-6835218,6835301-6835350,
           6836348-6836416,6836495-6836593,6836681-6836759,
           6837604-6837704,6838645-6838713,6839548-6839588,
           6839793-6841159,6841472-6841575,6841914-6842351,
           6843040-6843567
          Length = 1078

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 79  GKPSTEPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKMNPAEKEELQRSLEEGI 246
           G+P T+P P+ P A DA V       + +  E   +EV+    E++  + S EE +
Sbjct: 62  GRPQTQPSPSPPFAADAVVEAEAA-ALASSVEVRRLEVE--EEEEKARRESREESV 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,227
Number of Sequences: 37544
Number of extensions: 321347
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)