Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3844
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.78 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.3  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 415 WLERRGSRCNYTEILQLISQGGRRIYV 335
           W+ R G+R  + +++   ++ G RIYV
Sbjct: 87  WITRSGTREQFIDMVARCNKAGVRIYV 113


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 202 PAEKEELQRSLEEGIVYFFFYCLAGWTSS 288
           PA+K +    L  GIV F  YC A   SS
Sbjct: 403 PAKKYDCVTLLFSGIVGFGAYCAAHTDSS 431


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 202 PAEKEELQRSLEEGIVYFFFYCLAGWTSS 288
           PA+K +    L  GIV F  YC A   SS
Sbjct: 403 PAKKYDCVTLLFSGIVGFGAYCAAHTDSS 431


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 519 LNEANKTKWW*DLM 478
           L E  K  WW D+M
Sbjct: 333 LGEEEKADWWKDIM 346


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 519 LNEANKTKWW*DLM 478
           L E  K  WW D+M
Sbjct: 333 LGEEEKADWWKDIM 346


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 519 LNEANKTKWW*DLM 478
           L E  K  WW D+M
Sbjct: 333 LGEEEKADWWKDIM 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,816
Number of Sequences: 438
Number of extensions: 3454
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)