Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3842
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   0.95 
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    28   0.95 
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    27   2.2  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    27   2.9  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   3.8  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   3.8  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.1  
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   6.7  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.8  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   8.8  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 154  CSLNTHFKKKKILSADFRQSNYGIVLKT 71
            C LN++F +K ++  DF  +NY  V  T
Sbjct: 2050 CQLNSNFFEKILVDMDFNDNNYRTVANT 2077


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 240 VRTCFKKNFFFSNYNAQNKIVHFEYNNMYVL 148
           +RT F +N F SNY  +++I+ ++Y+N+  L
Sbjct: 5   IRTLFIRNRF-SNYRLRSQIIKYKYSNVSYL 34


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 249 LPPVRTCFKKNFFFSNYNAQNKIVH 175
           LPP  TCF+KN  F   +A   +VH
Sbjct: 126 LPPYSTCFEKNITF--LDAATNVVH 148


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +1

Query: 454 SSIQAIKKTPGGARYPIRPIVSRITIHWPVVLQRRDWENPGVTQLNPPLQHIP 612
           S+++ ++K  G A+ P    VSR+T H  +++  R   NP    L P ++++P
Sbjct: 15  SALEEVEKKAGFAQQPTPQKVSRVTAH-SILVNPRQKGNP----LLPHVRNVP 62


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 142 YSKNIHIIIFKMNNFILSIVVRKKKVFFKASTY 240
           Y  NI++  FK+  F  S V     V F+  TY
Sbjct: 62  YENNIYMRTFKLRPFAKSGVTNSSNVVFQMKTY 94


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 FNTRWAVSSSIQAIKKTPGGARYPI 504
           F   W ++ +I  +K+ P G  YPI
Sbjct: 27  FTDYWLINKTISLLKEYPSGFSYPI 51


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -3

Query: 333 TLQTETHYCFMAEIGWVVVPIRADSQEVLPPVRTCFKKNFFFSNYNAQNKIVHFEY 166
           T+     +CF   +G +  P+R  +Q++  P++  +   F  +  + Q    HF Y
Sbjct: 241 TVSNLKRFCFSESLGHIFAPLRFQNQQL--PLQHVYAFLFSIAYRDNQVDTAHFLY 294


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 106 NPQIIFSSS*SEYSKNIHIIIFKMNNFILSIVVRKK 213
           +P+ + +    +  K++  ++FKMN+    IVV KK
Sbjct: 9   SPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKK 44


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 101 PIELRNRAQNIIISCQQPFSFKLRPS 24
           P+  RN+ +N++ +C+   +F ++PS
Sbjct: 325 PVFQRNKGRNVLPACRDFAAFDIKPS 350


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 71  IIISCQQPFSFKLRPSHCR 15
           + + C+ PF+F  R  HCR
Sbjct: 175 VCLRCRTPFTFTNRKHHCR 193


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 273 IRADSQEVLPPVRTCFKKNFFFSNY 199
           I+AD+Q++LP + T     + F  Y
Sbjct: 881 IKADAQKLLPQILTAIHSQYSFRGY 905


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 435 HQVGCELVHPSNKKNSRGGP 494
           + VG +LVHP N KN+   P
Sbjct: 409 YSVGYKLVHPENAKNTFDHP 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,127
Number of Sequences: 5004
Number of extensions: 53723
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)