Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3841
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   4.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   8.5  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   8.5  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 74  FTAHVASVQLFHTMQSY 24
           F  HVA VQ FH +Q Y
Sbjct: 664 FKCHVAIVQYFHDLQDY 680


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 479 WSQAIEHYKLNADPL 523
           WSQA +HYKL+ + L
Sbjct: 245 WSQAAQHYKLDVNSL 259


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 407 SFLWTNGTLFDQAKFACDWWDNVDWSQAIE 496
           S +WT+ +  +QA    D W  +D   A+E
Sbjct: 310 SVVWTDSSEVNQALSLLDSWTEIDIDDALE 339


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 438 SNRVPLVQ-RNEAPW*PSRPSWHTW 367
           S R PL+    E P  PSR +W TW
Sbjct: 3   SERDPLLPVHGEGPESPSRRNWKTW 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,512
Number of Sequences: 5004
Number of extensions: 52834
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)