Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3841
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995 30 1.2
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 30 1.6
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 2.1
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 29 3.7
11_04_0436 + 17713591-17714301,17717587-17717820 28 5.0
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 28 5.0
05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268 27 8.7
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 27 8.7
02_03_0089 - 15091579-15091989,15092088-15092588,15092704-150929... 27 8.7
>03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995
Length = 417
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 297 SSLPERSGRLGSPRQGFRERCAVPCGFSCSLWGFLIKACSNWRPVGFI*IVNR 139
S L + GR G RQ + +P + WG L+ AC + VG + R
Sbjct: 327 SCLVDVLGRAGRLRQAYDVIQTMPVKVTAKAWGALLAACRKYGEVGLAEVAGR 379
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 184 GFNQEAPKRAREATRNCATFPEPLAWTTQSTTPFRETRFSCE 309
G Q PK AR AT + P P + +PF++ F+ E
Sbjct: 237 GQKQSTPKAARAATEDSTFHPLPALFKLTGLSPFKKAAFTPE 278
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 398 QGASFLWTNGTLFDQAKFACDWWDNVD 478
Q SF W+N T D K + DWW D
Sbjct: 1775 QLTSFPWSNSTYTDGDKLSDDWWSFYD 1801
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 368 HVCHDGREGHQGASFLWTNGTLFDQAKFACD 460
+ C DG+E + +WTN T A CD
Sbjct: 261 NTCKDGQECGEYTQLMWTNSTRVGCASVTCD 291
>11_04_0436 + 17713591-17714301,17717587-17717820
Length = 314
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Frame = -1
Query: 500 NVQWPVTSQRC----PTSRRRTWP 441
NV +PVTS+R P SRRR WP
Sbjct: 229 NVPFPVTSKRLIHPPPCSRRRMWP 252
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 206 REHEKPQGTAQRSRNP-WRGLPNLPLRSGRLDSRVST 313
R H A RNP W G PNL +SG + + +ST
Sbjct: 510 RLHFSKVCNATSVRNPEWEGSPNLAQKSGLISTLIST 546
>05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268
Length = 341
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 596 PGILYSSGCSW*ISGFCFGT*GFFPMDQRSVCNVQWPVTSQRCPTSRRRTW 444
PGIL W SG T F +D ++ ++WP S P +TW
Sbjct: 221 PGILVGHALYWMASGDHGSTILQFDLDDQTPAVIEWPSDSD--PNCYTQTW 269
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 166 GPPVRTGFNQEAPKRAREATRNCATFPEPLAWTTQST--TPFRETRFS 303
GPP PKR R T CA P P A T TP +R S
Sbjct: 64 GPPAGMATATATPKRTRTPTSTCAPPPPPHARHAPMTGQTPVAGSRSS 111
>02_03_0089 -
15091579-15091989,15092088-15092588,15092704-15092984,
15093104-15093443
Length = 510
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 580 LLVVPGEFLVSVSARRVFFQWIS 512
+L++P F V V ARR F W+S
Sbjct: 419 ILLIPQNFAVVVKARREGFAWVS 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,649,028
Number of Sequences: 37544
Number of extensions: 380628
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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