Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3841
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    29   2.6  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    27   7.8  

>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 240 RCAVPCGFSCSLWGF-LIKACSNWRPVGFI*IVNRPRQ 130
           R A+  GF  S   + L++  +NWRP+G + + +RP +
Sbjct: 358 RSALHFGFMSSRLEYTLVRTSTNWRPLGIVAMPSRPHK 395


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 197 KPQREHEKPQGTAQRSRNPWRGLPNLPLRSGR 292
           K  RE E P+ +  RSR+P R     P RS R
Sbjct: 95  KETRESESPEKSPVRSRSPRRSSARSPSRSPR 126


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/58 (24%), Positives = 22/58 (37%)
 Frame = +1

Query: 154  YEPYGPPVRTGFNQEAPKRAREATRNCATFPEPLAWTTQSTTPFRETRFSCEHVPIHP 327
            Y P+G P  + +N    +         +    P    T +T P+R T     HV + P
Sbjct: 2942 YTPHGGPTAS-YNTRPSRSVSTNPNGYSEITHPTVTQTTTTVPYRSTSSPNNHVRMRP 2998


>Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical
           protein F58B3.7 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 202 PKRAREATRNCATFPEPLAWTTQSTTPFRETRFSCEHVPIHPGN 333
           P RA   + N +  P+  A T +S   F E    CE+ P+ P N
Sbjct: 80  PIRANPVSDNISFLPK--AATDESVMLFGEEHVKCEYYPMTPNN 121


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 197 KPQREHEKPQGTAQRSRNPWRGLPNLPLRSGR 292
           K  RE E P+ +  RSR+P R     P RS R
Sbjct: 95  KETRESESPEKSPVRSRSPRRSSARSPSRSPR 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,609
Number of Sequences: 27780
Number of extensions: 320522
Number of successful extensions: 997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)